circRNA basic information
circBase ID: hsa_circ_0047886
Name: hsa_circ_ZCCHC2
Synonym: circ_0047886
Host Gene: ZCCHC2
Genomic location(hg19): chr18:60212034-60223530:+
Genomic location(hg38): chr18:62544801-62556297:+
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
 0004976
MONDO name: amyotrophic lateral sclerosis
Disease details: amyotrophic lateral sclerosis / ALS
Disease DO ID:
 332
Disease MeSH ID:
 D000690
Disease NCIt ID:
 C34373
Disease ICD11 ID:
 1982355687
Disease OMIM ID:
 -
Species: Human
Species details: Homo sapiens
Tissue specimen:

skeletal muscle biopsies; spinal cord; frontal cortex
Cell lines:

iPSC-derived motor neurons
In vivo animal model:

genetically engineered animal model
circRNA-disease information
Expression pattern:
DN
Associated gene: -
Associated microRNA: -
Biological function: unknown
Molecular mechanism: unknown
Biological pathway or process:

not specified
Detected method:
Q
S
Validation methods:

RNA-seq; RNase R Treatment; RT-qPCR; divergent primers PCR; Clinical Sample Validation; In Vivo Animal Model; Bioinformatics Analysis
Clinical significance:

downregulated in ALS muscle and also reduced in ALS spinal cord
Description:

hsa_circ_0047886 is selectively downregulated in ALS skeletal muscle with unchanged linear counterpart ZCCHC2 mRNA, and is also reduced in ALS spinal cord. No mechanism was defined.
Confidence score:

0.6521
Other information
Title:

Transcriptomic analysis of human ALS skeletal muscle reveals a disease-specific pattern of dysregulated circRNAs.

Journal: Aging
Published: 2022
PubMed ID: 36585921
Study type:

combined biological and clinical study
Data availability: GSE215424
Code availability: -