circRNA basic information
circBase ID: -
Name: hsa_circ_HIPK3
Synonym: HIPK3 / chr11:33307959-33309057
Host Gene: HIPK3
Genomic location(hg19): chr11:33307959-33309057:.
Genomic location(hg38): chr11:33286413-33287511:.
Subcellular localization: exosome
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
 0005575
MONDO name: colorectal cancer
Disease details: colorectal cancer
Disease DO ID:
 5672, 9256
Disease MeSH ID:
 -
Disease NCIt ID:
 C4978
Disease ICD11 ID:
 -
Disease OMIM ID:
 114500
Species: Human
Species details: Homo sapiens
Tissue specimen:

-
Cell lines:

DLD-1; DKO-1; DKs-8; HCT116; HKe3
In vivo animal model:

-
circRNA-disease information
Expression pattern:
DN
Associated gene: KRAS
Associated microRNA: -
Biological function: -
Molecular mechanism: -
Biological pathway or process:

not specified
Detected method:
Q
S
Validation methods:

RNA-seq; RT-qPCR; Back-Splice Junction PCR / divergent primers PCR
Clinical significance:

-
Description:

The HIPK3-derived circRNA is decreased in KRAS-mutant colon/colorectal cancer cell lines versus KRAS WT controls and is detectable in exosomes, supporting a KRAS-mutation-associated global reduction of circRNA abundance.
Confidence score:

0.3401
Other information
Title:

Circular RNAs are down-regulated in KRAS mutant colon cancer cells and can be transferred to exosomes.

Journal: Scientific reports
Published: 2016
PubMed ID: 27892494
Study type:

biological research
Data availability: -
Code availability: -