circRNA basic information
circBase ID: hsa_circ_0003221
Name: hsa_circ_PTK2
Synonym: -
Host Gene: PTK2
Genomic location(hg19): chr8:141856358-141900868:-
Genomic location(hg38): chr8:140846259-140890769:-
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0004950
MONDO name: gastric carcinoma
Disease details: Gastric carcinoma
Disease DO ID:
10538, 5517
Disease MeSH ID:
-
Disease NCIt ID:
C4911
Disease ICD11 ID:
1503707183
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

malignant tissues; normal tissues; GC tissues; adjacent normal tissues; xenograft tumors

Cell lines:

MGC-803; SGC-7901; BGC-823; MKN28; MIKN28; RGM-1

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: Cyclin A1, PCNA, Bax, Cleaved caspase-3
Associated microRNA: miR-139-3p
Biological function: promotes GC cell proliferation and tumor growth; inhibits cell apoptosis
Molecular mechanism: circPTK2 acts as a sponge of miR-139-3p; circPTK2 knockdown decreases Cyclin A1 and PCNA and increases Bax and Cleaved caspase-3; miR-139-3p inhibition reverses circPTK2 knockdown-mediated effects on proliferation, apoptosis, and tumor growth
Biological pathway or process:

proliferation (promotes); apoptosis (inhibits); ceRNA regulation (promotes); other pathway/process (promotes)

Detected method:
Q
Validation methods:

RT-qPCR; Clinical Sample Validation; Bioinformatics Analysis; Transfection; Colony Formation Assay; Annexin V/PI Flow Cytometry; Western Blot; Luciferase Reporter Assay; RIP (RNA Immunoprecipitation); In Vivo Animal Model

Clinical significance:

circPTK2 expression was associated with TNM stage, lymph node metastasis, and tumor size; it may function as an effective gene target for managing GC

Description:

circPTK2 is up-regulated in gastric carcinoma tissues and cell lines. It promotes GC cell proliferation and xenograft tumor growth while inhibiting apoptosis, at least partly by sponging miR-139-3p and regulating proliferation- and apoptosis-related factors including Cyclin A1, PCNA, Bax, and Cleaved caspase-3. Its expression is associated with TNM stage, lymph node metastasis, and tumor size, suggesting potential clinical relevance as a therapeutic target.

Confidence score:

0.7032

Other information
Title:

Circular RNA PTK2 Accelerates Cell Proliferation and Inhibits Cell Apoptosis in Gastric Carcinoma via miR-139-3p.

Journal: Digestive diseases and sciences
Published: 2021
PubMed ID: 32504353
Study type:

combined biological and clinical study

Data availability: available from the corresponding author upon reasonable request
Code availability: -