circRNA basic information
circBase ID: -
Name: hsa_circ_PSD3
Synonym: circPSD3
Host Gene: PSD3
Genomic location(hg19): -
Genomic location(hg38): -
Subcellular localization: nucleus and cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005231
MONDO name: hepatitis C virus infection
Disease details: Hepatitis C virus infection
Disease DO ID:
1883
Disease MeSH ID:
D006526
Disease NCIt ID:
C3098
Disease ICD11 ID:
-
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

-

Cell lines:

Huh7; Huh7.5.1; Huh7 Sec14L2; Huh7.5 Sec14L2

In vivo animal model:

-

circRNA-disease information
Expression pattern:
UP
Associated gene: eIF4A3
Associated microRNA: -
Biological function: Promotes viral RNA abundance/replication (pro-viral factor) in HCV- and DENV-infected liver cells.
Molecular mechanism: Acts at a post-translational step to enhance viral RNA amplification; binds eIF4A3 and may modulate the cellular NMD pathway, but circPSD3 and eIF4A3 affect HCV RNA abundances by distinct mechanisms.
Biological pathway or process:

viral replication (promotes); other pathway/process (other)

Detected method:
Q
S
Validation methods:

RNA-seq; Bioinformatics Analysis; RT-qPCR; Transfection; FISH / smFISH; RNase R Treatment; In Vivo Animal Model; Luciferase Reporter Assay; MTT; Northern Blot; droplet digital PCR (ddPCR); Western Blot

Clinical significance:

-

Description:

circPSD3 is up-regulated in HCV-infected liver cells and functions as a pro-viral factor that increases HCV RNA abundance; it also promotes DENV infectivity. Mechanistically, it binds eIF4A3 and can modulate NMD substrates, but its pro-viral effect occurs mainly at a post-translational step and is independent of eIF4A3’s antiviral NMD-related effects.

Confidence score:

0.6913

Other information
Title:

Host-derived circular RNAs display proviral activities in Hepatitis C virus-infected cells.

Journal: PLoS pathogens
Published: 2020
PubMed ID: 32764824
Study type:

biological research

Data availability: -
Code availability: -