circRNA basic information
circBase ID: hsa_circ_0012077
Name: hsa_circ_PTPRF
Synonym: -
Host Gene: PTPRF
Genomic location(hg19): chr1:44054401-44054671:+
Genomic location(hg38): chr1:43588730-43589000:+
Subcellular localization: exosome
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0002562
MONDO name: demyelinating disease
Disease details: immune-mediated demyelinating diseases
Disease DO ID:
3213
Disease MeSH ID:
D003711
Disease NCIt ID:
C34527
Disease ICD11 ID:
-
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

cerebrospinal fluid (CSF) exosomes

Cell lines:

-

In vivo animal model:

-

circRNA-disease information
Expression pattern:
UP
Associated gene: GRIN2B, PTPRF, RAD23B
Associated microRNA: hsa-miR-1253, hsa-miR-153-5p, hsa-miR-660-5p, hsa-miR-766-5p, hsa-miR-877-3p
Biological function: biomarker for diagnosis of immune-mediated demyelinating diseases; associated with CSF IgG levels
Molecular mechanism: Predicted ceRNA mechanism (circRNA/miRNA/mRNA network); correlated with CSF IgG levels by canonical correlation analysis
Biological pathway or process:

ceRNA regulation (other); p53 signaling (other); autophagy (other); other pathway/process (other)

Detected method:
Q
M
Validation methods:

Microarray; RT-qPCR; Clinical Sample Validation; ROC Analysis; Bioinformatics Analysis; Cohort Study

Clinical significance:

Diagnostic accuracy was 100% when hsa_circ_0012077 was employed alone for diagnosing immune-mediated demyelinating disease (AUC = 1.00).

Description:

Exosomal hsa_circ_0012077 is up-regulated in CSF from patients with immune-mediated demyelinating diseases and has perfect diagnostic performance (AUC=1.00) in this cohort. Its expression level is correlated with CSF IgG levels, and it is predicted to act in a ceRNA network involving miRNAs and target genes such as GRIN2B.

Confidence score:

0.5534

Other information
Title:

Exosomal Circular RNA as a Biomarker Platform for the Early Diagnosis of Immune-Mediated Demyelinating Disease.

Journal: Frontiers in genetics
Published: 2019
PubMed ID: 31611906
Study type:

combined biological and clinical study

Data availability: The raw data supporting the conclusions of this manuscript will be made available by the authors, without undue reservation, to any qualified researcher.
Code availability: -