circRNA basic information
circBase ID: -
Name: hsa_circ_NFIX
Synonym: -
Host Gene: NFIX
Genomic location(hg19): -
Genomic location(hg38): -
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0021042
MONDO name: glioma
Disease details: glioma
Disease DO ID:
-
Disease MeSH ID:
D005910
Disease NCIt ID:
C3059
Disease ICD11 ID:
-
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

glioma tissue; paired normal brain tissue; tumor tissues; normal brain tissues

Cell lines:

HA1800; SF-539; SHG-44; U87

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: NOTCH1
Associated microRNA: miR-34a-5p
Biological function: promotes glioma progression by enhancing proliferation and migration and inhibiting apoptosis
Molecular mechanism: ceRNA sponge of miR-34a-5p leading to upregulation of NOTCH1 and activation of the Notch signaling pathway
Biological pathway or process:

Notch (promotes); proliferation (promotes); migration (promotes); apoptosis (inhibits); ceRNA regulation (promotes)

Detected method:
Q
S
Validation methods:

RNA-seq; Bioinformatics Analysis; RT-qPCR; RIP (RNA Immunoprecipitation); Luciferase Reporter Assay; Transfection; CCK8; Wound Healing Assay; Transwell Assay; Annexin V/PI Flow Cytometry; Western Blot; In Vivo Animal Model; Clinical Sample Validation

Clinical significance:

-

Description:

circNFIX is up-regulated in glioma tissues/cell lines and promotes glioma growth and motility. Mechanistically, circNFIX sponges miR-34a-5p to de-repress NOTCH1, activating Notch signaling and thereby enhancing proliferation/migration while reducing apoptosis; knockdown of circNFIX suppresses xenograft tumor growth.

Confidence score:

0.73

Other information
Title:

NFIX Circular RNA Promotes Glioma Progression by Regulating miR-34a-5p via Notch Signaling Pathway.

Journal: Frontiers in molecular neuroscience
Published: 2018
PubMed ID: 30072869
Study type:

combined biological and clinical study

Data availability: GSE86202
Code availability: -