circRNA basic information
circBase ID: -
Name: hsa_circ_SCD
Synonym: circ_novel_4982
Host Gene: SCD
Genomic location(hg19): -
Genomic location(hg38): -
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0007256
MONDO name: hepatocellular carcinoma
Disease details: hepatocellular carcinoma
Disease DO ID:
684, 686
Disease MeSH ID:
D006528
Disease NCIt ID:
C3099
Disease ICD11 ID:
1294035808
Disease OMIM ID:
114550
Species: Human
Species details: Homo sapiens
Tissue specimen:

HCC (Tumor) tissue; adjacent non-tumor tissue (Peri-tumor) / para-carcinoma tissue

Cell lines:

Huh7; HepG2

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: RBM3, ERK
Associated microRNA: -
Biological function: promotes HCC cell proliferation and cell cycle progression; increases xenografted tumor growth
Molecular mechanism: RBM3 binds SCD mRNA 3’UTR and promotes SCD-circRNA 2 biogenesis; SCD-circRNA 2 mediates RBM3-driven ERK phosphorylation to promote proliferation
Biological pathway or process:

proliferation (promotes); cell cycle (promotes); ERK (promotes)

Detected method:
Q
B
S
Validation methods:

RNA-seq; RNase R Treatment; RT-qPCR; Northern Blot; divergent primers PCR; Sanger Sequencing; Clinical Sample Validation; Cohort Study; Survival Analysis; ROC Analysis; RIP (RNA Immunoprecipitation); Transfection; CCK8; EdU Staining; Cell Cycle Assay; Western Blot; In Vivo Animal Model; Bioinformatics Analysis

Clinical significance:

High SCD-circRNA 2 expression levels exhibited both worse recurrence-free survival (RFS) and overall survival (OS) and was an independent predictor for reduced RFS and OS in HCC patients

Description:

SCD-circRNA 2 is up-regulated in HCC tissues and its high expression predicts worse RFS/OS. Functionally, it is required for RBM3-driven proliferation and cell-cycle progression, and it promotes ERK phosphorylation downstream of RBM3.

Confidence score:

0.8618

Other information
Title:

The RNA-binding protein RBM3 promotes cell proliferation in hepatocellular carcinoma by regulating circular RNA SCD-circRNA 2 production.

Journal: EBioMedicine
Published: 2019
PubMed ID: 31235426
Study type:

combined biological and clinical study

Data availability: GSE55092; GSE45267; GSE41804; GSE14520
Code availability: -