circRNA basic information
circBase ID: hsa_circ_0003410
Name: hsa_circ_UBAP2
Synonym: -
Host Gene: UBAP2
Genomic location(hg19): chr9:33996220-34017187:-
Genomic location(hg38): chr9:33996222-34017189:-
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0007256
MONDO name: hepatocellular carcinoma
Disease details: hepatocellular carcinoma
Disease DO ID:
684, 686
Disease MeSH ID:
D006528
Disease NCIt ID:
C3099
Disease ICD11 ID:
1294035808
Disease OMIM ID:
114550
Species: Human
Species details: Homo sapiens
Tissue specimen:

HCC tumor tissues; adjacent normal tissues

Cell lines:

HepG2; Hep1; Hep3B; Huh7; SMMC7721; L02; 293T; THP-1

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: CCL5, UBAP2
Associated microRNA: miR-139-3p
Biological function: promotes HCC cell proliferation and migration; promotes tumor growth; increases the ratio of M2/M1 macrophages by recruiting/polarizing M2 macrophages
Molecular mechanism: ceRNA mechanism: hsa_circ_0003410 sponges miR-139-3p to upregulate CCL5, leading to M2 macrophage recruitment/polarization and increased M2/M1 ratio
Biological pathway or process:

proliferation (promotes); migration (promotes); invasion (promotes); immune regulation (promotes); ceRNA regulation (promotes)

Detected method:
Q
S
Validation methods:

RNA-seq; RT-qPCR; RNase R Treatment; Transfection; CCK8; EdU Staining; Transwell Assay; Wound Healing Assay; FISH / smFISH; RNA Pull-Down; Luciferase Reporter Assay; Western Blot; ELISA; Flow Cytometry(Non-apoptosis/cycle); IF (Immunofluorescence); Clinical Sample Validation; Cohort Study; Survival Analysis; Bioinformatics Analysis; In Vivo Animal Model

Clinical significance:

Expression of hsa_circ_0003410 was associated with tumor size; survival difference between high and low expression groups was not significant.

Description:

hsa_circ_0003410 is up-regulated in HCC and promotes proliferation, migration, and in vivo tumor growth. It functions as a ceRNA by sponging miR-139-3p to upregulate CCL5, which enhances M2 macrophage recruitment/polarization and increases the M2/M1 macrophage ratio in the HCC microenvironment.

Confidence score:

0.8428

Other information
Title:

hsa_circ_0003410 promotes hepatocellular carcinoma progression by increasing the ratio of M2/M1 macrophages through the miR-139-3p/CCL5 axis.

Journal: Cancer science
Published: 2022
PubMed ID: 34890089
Study type:

combined biological and clinical study

Data availability: -
Code availability: -