circRNA basic information
circBase ID: hsa_circ_0039930
Name: hsa_circ_NFATC3
Synonym: circNFATC3
Host Gene: NFATC3
Genomic location(hg19): chr16:68160350-68160513:+
Genomic location(hg38): chr16:68126447-68126610:+
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0001056
MONDO name: gastric cancer
Disease details: gastric cancer
Disease DO ID:
10534
Disease MeSH ID:
-
Disease NCIt ID:
C9331
Disease ICD11 ID:
1397617262
Disease OMIM ID:
613659
Species: Human
Species details: Homo sapiens
Tissue specimen:

GC tissues; adjacent normal tissues

Cell lines:

MKN-28; AGS

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: RAI14, Ago2
Associated microRNA: miR-23b-3p
Biological function: Promotes GC cell growth, colony formation, invasion and in vivo tumorigenesis; circNFATC3 knockdown inhibits these phenotypes.
Molecular mechanism: Acts as a miRNA sponge (ceRNA) for miR-23b-3p, thereby upregulating RAI14; associated with Ago2-containing RISC.
Biological pathway or process:

proliferation (promotes); invasion (promotes); metastasis (other); ceRNA regulation (promotes)

Detected method:
Q
H
Validation methods:

RT-qPCR; Microarray; RNase R Treatment; FISH / smFISH; Luciferase Reporter Assay; RIP (RNA Immunoprecipitation); Transfection; Colony Formation Assay; Transwell Assay; In Vivo Animal Model; IHC (Immunohistochemistry); Survival Analysis; Bioinformatics Analysis

Clinical significance:

High circNFATC3 expression is associated with poor prognosis (shorter overall survival) in patients with GC.

Description:

In gastric cancer, circNFATC3 (hsa_circ_0039930) is up-regulated and mainly localized in the cytoplasm. It promotes tumor growth and invasion by sponging miR-23b-3p to increase RAI14, and high circNFATC3 expression is linked to poorer overall survival.

Confidence score:

0.8222

Other information
Title:

RAI14 Regulated by circNFATC3/miR-23b-3p axis Facilitates Cell Growth and Invasion in Gastric Cancer.

Journal: Cell transplantation
Published: 2021
PubMed ID: 33840258
Study type:

combined biological and clinical study

Data availability: TCGA dataset (http://xena.ucsc.edu/); Data can be accessed by contacting first or corresponding author on demand.
Code availability: -