circRNA basic information
circBase ID: hsa_circ_0042881
Name: hsa_circ_NF1
Synonym: circNF1
Host Gene: NF1
Genomic location(hg19): chr17:29483000-29509683:+
Genomic location(hg38): chr17:31155982-31182665:+
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0004950
MONDO name: gastric carcinoma
Disease details: gastric carcinoma
Disease DO ID:
10538, 5517
Disease MeSH ID:
-
Disease NCIt ID:
C4911
Disease ICD11 ID:
1503707183
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

tumor tissue; adjacent normal tissue

Cell lines:

MKN28; NCI-N87; AGS; KATOIII; RF1; RF48; HFE145

In vivo animal model:

-

circRNA-disease information
Expression pattern:
UP
Associated gene: MAP7, AKT3, P-AKT
Associated microRNA: miR-16
Biological function: promotes cell proliferation; promotes migration; inhibits apoptosis
Molecular mechanism: circNF1 acts as a miR-16 sponge, derepressing MAP7 and AKT3 and increasing AKT phosphorylation.
Biological pathway or process:

proliferation (promotes); migration (promotes); apoptosis (inhibits); PI3K/AKT (promotes); ceRNA regulation (promotes)

Detected method:
Q
S
Validation methods:

RNA-seq; Back-Splice Junction PCR / divergent primers PCR; divergent primers PCR; Sanger Sequencing; RNase R Treatment; RT-qPCR; Clinical Sample Validation; Luciferase Reporter Assay; Transfection; Western Blot; CCK8; Colony Formation Assay; Wound Healing Assay; Annexin V/PI Flow Cytometry; Bioinformatics Analysis

Clinical significance:

circNF1 represents a novel potential biomarker and therapeutic target in GC patients.

Description:

circNF1 (hsa_circ_0042881), derived from NF1 exons 2-8, is up-regulated in gastric carcinoma tissues and GC cell lines. It promotes malignant phenotypes (proliferation and migration) and reduces apoptosis by sponging miR-16, thereby increasing MAP7 and AKT3 translation and enhancing AKT pathway activity.

Confidence score:

0.8052

Other information
Title:

Novel circular RNA circNF1 acts as a molecular sponge, promoting gastric cancer by absorbing miR-16.

Journal: Endocrine-related cancer
Published: 2019
PubMed ID: 30576282
Study type:

combined biological and clinical study

Data availability: -
Code availability: -