circRNA basic information
circBase ID: -
Name: hsa_circ_ESRP1
Synonym: circESRP1
Host Gene: ESRP1
Genomic location(hg19): -
Genomic location(hg38): -
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005086
MONDO name: renal cell carcinoma
Disease details: renal cell carcinoma
Disease DO ID:
4450
Disease MeSH ID:
D002292
Disease NCIt ID:
-
Disease ICD11 ID:
-
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

ccRCC tissues; adjacent normal kidney tissues

Cell lines:

786-O; ACHN; Caki-1; A498; HK-2

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
DN
Associated gene: CTCF, c-Myc
Associated microRNA: miR-3942, miR-3942-5p
Biological function: Inhibits ccRCC tumor growth, proliferation, migration, invasion, EMT, and metastasis.
Molecular mechanism: circESRP1 acts as a ceRNA sponge for miR-3942/miR-3942-5p to upregulate CTCF; CTCF binds ESRP1 promoter to promote circESRP1 transcription forming a positive feedback loop; axis regulates c-Myc-mediated EMT.
Biological pathway or process:

EMT (inhibits); metastasis (inhibits); proliferation (inhibits); migration (inhibits); invasion (inhibits); ceRNA regulation (promotes)

Detected method:
Q
M
Validation methods:

Microarray; Bioinformatics Analysis; RT-qPCR; Back-Splice Junction PCR / divergent primers PCR; Sanger Sequencing; RNase R Treatment; Actinomycin D / DRB Stability Assay; Nuclear-Cytoplasmic Fractionation; FISH / smFISH; RNA Pull-Down; RIP (RNA Immunoprecipitation); Luciferase Reporter Assay; Transfection; Colony Formation Assay; EdU Staining; Transwell Assay; Wound Healing Assay; Western Blot; ChIP / ChIP-seq; In Vivo Animal Model; IHC (Immunohistochemistry); Clinical Sample Validation; Cohort Study

Clinical significance:

Lower circESRP1 expression is associated with advanced tumor size, TNM stage, distant metastasis, and poor prognosis; high circESRP1 expression is associated with favorable clinical outcomes.

Description:

circESRP1 is down-regulated in ccRCC and functions as a tumor suppressor. It sponges miR-3942/miR-3942-5p to relieve repression of CTCF, while CTCF transcriptionally promotes circESRP1 to form a positive feedback loop that inhibits c-Myc-mediated EMT and ccRCC progression.

Confidence score:

0.8972

Other information
Title:

CircESRP1 inhibits clear cell renal cell carcinoma progression through the CTCF-mediated positive feedback loop.

Journal: Cell death & disease
Published: 2021
PubMed ID: 34775467
Study type:

combined biological and clinical study

Data availability: GSE100186
Code availability: -