circRNA basic information
circBase ID: hsa_circ_0072309
Name: hsa_circ_LIFR
Synonym: circLIFR
Host Gene: LIFR
Genomic location(hg19): chr5:38523520-38530768:-
Genomic location(hg38): chr5:38523418-38530666:-
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0007256
MONDO name: hepatocellular carcinoma
Disease details: hepatocellular carcinoma / HCC
Disease DO ID:
684, 686
Disease MeSH ID:
D006528
Disease NCIt ID:
C3099
Disease ICD11 ID:
1294035808
Disease OMIM ID:
114550
Species: Human
Species details: Homo sapiens
Tissue specimen:

HCC tissues; adjacent liver tissues

Cell lines:

Huh7; HepG2; SNU387; PLC/PRF/5; Hep3B

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
DN
Associated gene: GSK-3beta, beta-catenin, Ago2
Associated microRNA: miR-624-5p
Biological function: inhibits proliferation, migration, invasion, and tumor growth in HCC
Molecular mechanism: Acts as a miRNA sponge for miR-624-5p to upregulate GSK-3beta, facilitating beta-catenin degradation and preventing its nuclear translocation, thereby inactivating GSK-3beta/beta-catenin (Wnt/beta-catenin) signaling.
Biological pathway or process:

proliferation (inhibits); migration (inhibits); invasion (inhibits); Wnt/beta-catenin (inhibits); ceRNA regulation (promotes)

Detected method:
Q
S
Validation methods:

RNA-seq; Bioinformatics Analysis; RT-qPCR; Back-Splice Junction PCR / divergent primers PCR; RNase R Treatment; Sanger Sequencing; Actinomycin D / DRB Stability Assay; FISH / smFISH; RIP (RNA Immunoprecipitation); RNA Pull-Down; Luciferase Reporter Assay; Transfection; CCK8; Colony Formation Assay; Transwell Assay; Western Blot; IHC (Immunohistochemistry); In Vivo Animal Model; H&E Staining; Survival Analysis; Clinical Sample Validation; Cohort Study

Clinical significance:

Higher levels of circLIFR in HCC patients correlated with favorable overall survival and recurrence-free survival; higher expression was correlated with lower AFP, earlier BCLC stage, earlier TNM stage, smaller tumor size, and non-microvascular invasion.

Description:

circLIFR (hsa_circ_0072309), derived from LIFR, is down-regulated in HCC tissues and functions as a tumor suppressor. It sponges miR-624-5p to increase GSK-3beta, promoting beta-catenin degradation and inhibiting Wnt/beta-catenin signaling, thereby reducing HCC cell proliferation and invasion and suppressing tumor growth in xenograft models. Higher circLIFR levels are associated with better OS and RFS in the patient cohort.

Confidence score:

0.896

Other information
Title:

CircLIFR suppresses hepatocellular carcinoma progression by sponging miR-624-5p and inactivating the GSK-3beta/beta-catenin signaling pathway.

Journal: Cell death & disease
Published: 2022
PubMed ID: 35581180
Study type:

combined biological and clinical study

Data availability: All data needed to evaluate the conclusions in this study are presented in the paper. Additional data related to this paper may be requested from the corresponding authors.
Code availability: -