circRNA basic information
circBase ID: -
Name: hsa_circ_KDM1A
Synonym: circ 3_2 / circLSD1-3_2
Host Gene: KDM1A
Genomic location(hg19): -
Genomic location(hg38): -
Subcellular localization: nucleus and cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005061
MONDO name: lung adenocarcinoma
Disease details: lung adenocarcinoma / LUAD
Disease DO ID:
3910
Disease MeSH ID:
C538231
Disease NCIt ID:
C3512
Disease ICD11 ID:
-
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

LUAD tissue; adjacent non-tumor tissue

Cell lines:

PC9; PSAE; A549

In vivo animal model:

-

circRNA-disease information
Expression pattern:
DN
Associated gene: -
Associated microRNA: -
Biological function: participates in intercellular communication (release and uptake between cancer and non-cancer lung cells)
Molecular mechanism: exported as extracellular RNA; uptake via conditioned media or purified EVs; protected by EV membranes in PC9
Biological pathway or process:

other pathway/process (other)

Detected method:
Q
Validation methods:

Back-Splice Junction PCR / divergent primers PCR; Sanger Sequencing; RT-qPCR; FISH / smFISH; RNase R Treatment; Clinical Sample Validation

Clinical significance:

circ 3_2 LSD1-RNAs were significantly fewer in LUAD tissues compared to matching non-tumor areas

Description:

circ 3_2 (a KDM1A-derived circLSD1 RNA) is down-regulated in LUAD tumor tissues versus matched non-tumor tissues. It is also detectable as extracellular RNA and can be transferred between lung cancer and non-cancer epithelial cells, consistent with a role in EV/RNP-mediated intercellular communication.

Confidence score:

0.5909

Other information
Title:

Vesicular Release and Uptake of Circular LSD1-RNAs from Non-Cancer and Cancer Lung Cells.

Journal: International journal of molecular sciences
Published: 2023
PubMed ID: 37762282
Study type:

combined biological and clinical study

Data availability: -
Code availability: -