circRNA basic information
circBase ID: hsa_circ_0003789
Name: hsa_circ_TSN
Synonym: -
Host Gene: TSN
Genomic location(hg19): chr2:122514815-122520660:+
Genomic location(hg38): chr2:121757239-121763084:+
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0001056
MONDO name: gastric cancer
Disease details: gastric cancer
Disease DO ID:
10534
Disease MeSH ID:
-
Disease NCIt ID:
C9331
Disease ICD11 ID:
1397617262
Disease OMIM ID:
613659
Species: Human
Species details: Homo sapiens
Tissue specimen:

gastric cancer tissues; corresponding paracancerous tissues; adjacent normal tissues; tumor tissues

Cell lines:

AGS; SNU-1; GES-1

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: ZFP36L2, Ki67, PCNA, Bax, Bcl-2
Associated microRNA: miR-429
Biological function: Promotes gastric cancer cell growth, proliferation, colony formation, invasion and xenograft tumor growth, and inhibits apoptosis.
Molecular mechanism: circ_0003789 functions as a ceRNA/miRNA sponge for miR-429, thereby upregulating ZFP36L2 expression and promoting gastric cancer progression.
Biological pathway or process:

ceRNA regulation (promotes); proliferation (promotes); invasion (promotes); apoptosis (inhibits)

Detected method:
Q
Validation methods:

RNase R Treatment; RT-qPCR; Clinical Sample Validation; RNA Pull-Down; Bioinformatics Analysis; Luciferase Reporter Assay; Transfection; EdU Staining; CCK8; Colony Formation Assay; Annexin V/PI Flow Cytometry; Transwell Assay; Western Blot; In Vivo Animal Model

Clinical significance:

circ_0003789 upregulation is positively associated with poor tumor differentiation, clinical advanced stage, and distal metastasis; it may be a therapeutic target for gastric cancer.

Description:

circ_0003789 is up-regulated in gastric cancer tissues and cells. It promotes gastric cancer progression by sponging miR-429 and increasing ZFP36L2 expression, thereby enhancing proliferation, colony formation, invasion and xenograft tumor growth while suppressing apoptosis. The study suggests circ_0003789 may be a therapeutic target for gastric cancer.

Confidence score:

0.7597

Other information
Title:

Circ_0003789 Knockdown Inhibits Tumor Progression by miR-429/ZFP36L2 Axis in Gastric Cancer.

Journal: Biochemical genetics
Published: 2024
PubMed ID: 37962691
Study type:

combined biological and clinical study

Data availability: Not applicable; supplementary material available at https:// doi. org/ 10. 1007/ s10528-023-10535-1
Code availability: -