circRNA basic information
circBase ID: hsa_circ_0000915
Name: hsa_circ_FKBP8
Synonym: -
Host Gene: FKBP8
Genomic location(hg19): chr19:18650180-18650530:-
Genomic location(hg38): chr19:18539370-18539720:-
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0007959
MONDO name: medulloblastoma
Disease details: medulloblastoma
Disease DO ID:
0050902, 0060104
Disease MeSH ID:
D008527
Disease NCIt ID:
C3222
Disease ICD11 ID:
290815825
Disease OMIM ID:
155255
Species: Human
Species details: Homo sapiens
Tissue specimen:

medulloblastoma tumor tissue; cerebellum

Cell lines:

Daoy; UW-228

In vivo animal model:

-

circRNA-disease information
Expression pattern:
DN
Associated gene: -
Associated microRNA: -
Biological function: Minimal impact on medulloblastoma cell proliferation upon depletion or overexpression.
Molecular mechanism: Not specified; differential splicing/back-splicing regulation independent of corresponding linear mRNAs.
Biological pathway or process:

proliferation (other); other pathway/process (other)

Detected method:
Q
S
Validation methods:

circRNA-seq; RNase R Treatment; Back-Splice Junction PCR / divergent primers PCR; Sanger Sequencing; RT-qPCR; Clinical Sample Validation; Transfection; EdU Staining; MTT

Clinical significance:

-

Description:

hsa_circ_0000915 (FKBP8 circRNA) is down-regulated in SHH-subtype medulloblastoma compared with normal cerebellum while its corresponding linear mRNA is unchanged. Functional perturbation (siRNA knockdown or overexpression) shows minimal effects on proliferation in medulloblastoma cell lines.

Confidence score:

0.7059

Other information
Title:

Circular RNAs in Hedgehog Signaling Activation and Hedgehog-Mediated Medulloblastoma Tumors.

Journal: Cancers
Published: 2021
PubMed ID: 34680287
Study type:

combined biological and clinical study

Data availability: GSE183194
Code availability: -