circRNA basic information
circBase ID: hsa_circ_0007915
Name: hsa_circ_IPO11
Synonym: circIPO11
Host Gene: IPO11
Genomic location(hg19): chr5:61745753-61747760:+
Genomic location(hg38): chr5:62449926-62451933:+
Subcellular localization: nucleus
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0007256
MONDO name: hepatocellular carcinoma
Disease details: hepatocellular carcinoma
Disease DO ID:
684, 686
Disease MeSH ID:
D006528
Disease NCIt ID:
C3099
Disease ICD11 ID:
1294035808
Disease OMIM ID:
114550
Species: Human
Species details: Homo sapiens
Tissue specimen:

HCC tumor tissues; peri-tumor tissues

Cell lines:

Huh7; PLC/PRF/5; 293 T

In vivo animal model:

cell line-derived xenograft; other disease animal model

circRNA-disease information
Expression pattern:
UP
Associated gene: TOP1, GLI1 promoter
Associated microRNA: -
Biological function: Promotes self-renewal maintenance of liver CSCs, tumor initiation and HCC propagation; enhances oncosphere formation and proliferation; circIPO11 knockout/knockdown suppresses liver cancer progression.
Molecular mechanism: circIPO11 binds and recruits TOP1 to the GLI1 promoter to trigger GLI1 transcription, activating Hedgehog (Hh) signaling; not acting as a miRNA sponge.
Biological pathway or process:

Hedgehog (promotes); stemness (promotes); proliferation (promotes)

Detected method:
Q
B
M
Validation methods:

Microarray; Bioinformatics Analysis; RNase R Treatment; Actinomycin D / DRB Stability Assay; Back-Splice Junction PCR / divergent primers PCR; Sanger Sequencing; RT-qPCR; Northern Blot; ISH (In Situ Hybridization); FISH / smFISH; Nuclear-Cytoplasmic Fractionation; Transfection; Transwell Assay; Colony Formation Assay; Luciferase Reporter Assay; RIP (RNA Immunoprecipitation); RNA Pull-Down; Western Blot; ChIP / ChIP-seq; In Vivo Animal Model; H&E Staining; Flow Cytometry(Non-apoptosis/cycle)

Clinical significance:

-

Description:

circIPO11 is up-regulated in HCC tumor tissues and liver CSCs and is required for CSC self-renewal and tumor initiation/propagation. Mechanistically, it binds TOP1 and recruits it to the GLI1 promoter to activate GLI1 transcription, thereby promoting Hedgehog signaling.

Confidence score:

0.8283

Other information
Title:

Circular RNA circIPO11 drives self-renewal of liver cancer initiating cells via Hedgehog signaling.

Journal: Molecular cancer
Published: 2021
PubMed ID: 34649567
Study type:

combined biological and clinical study

Data availability: -
Code availability: -