circRNA basic information
circBase ID: -
Name: hsa_circ_PRKDC
Synonym: circPRKDC
Host Gene: PRKDC
Genomic location(hg19): -
Genomic location(hg38): -
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0001056
MONDO name: gastric cancer
Disease details: gastric cancer
Disease DO ID:
10534
Disease MeSH ID:
-
Disease NCIt ID:
C9331
Disease ICD11 ID:
1397617262
Disease OMIM ID:
613659
Species: Human
Species details: Homo sapiens
Tissue specimen:

GC tissues; adjacent non-tumor tissues; serum

Cell lines:

HGC27; AGS; NCI-N87; GES-1

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: IRS2
Associated microRNA: miR-493-5p
Biological function: promotes GC cell viability, migration, invasion, EMT and tumor growth
Molecular mechanism: ceRNA sponge of miR-493-5p leading to increased IRS2 expression
Biological pathway or process:

proliferation (promotes); migration (promotes); invasion (promotes); EMT (promotes); ceRNA regulation (promotes)

Detected method:
Q
Validation methods:

RT-qPCR; Clinical Sample Validation; ROC Analysis; Transfection; CCK8; Colony Formation Assay; Transwell Assay; Western Blot; Luciferase Reporter Assay; RIP (RNA Immunoprecipitation); In Vivo Animal Model; IHC (Immunohistochemistry)

Clinical significance:

circPRKDC expression was higher in the III/IV stage than that in I/II stage; serum circPRKDC ROC AUC=0.8572 for diagnosing GC

Description:

circPRKDC is up-regulated in gastric cancer tissues/serum and promotes GC cell proliferation/viability, migration, invasion and EMT, as well as xenograft tumor growth. Mechanistically, it functions as a ceRNA that sponges miR-493-5p to increase IRS2 expression, forming the circPRKDC/miR-493-5p/IRS2 axis with diagnostic potential.

Confidence score:

0.7624

Other information
Title:

Circular RNA circPRKDC promotes tumorigenesis of gastric cancer via modulating insulin receptor substrate 2 (IRS2) and mediating microRNA-493-5p.

Journal: Bioengineered
Published: 2021
PubMed ID: 34605348
Study type:

combined biological and clinical study

Data availability: -
Code availability: -