circRNA basic information
circBase ID: hsa_circ_0002647
Name: hsa_circ_EHMT1
Synonym: -
Host Gene: EHMT1
Genomic location(hg19): chr9:140611077-140646860:+
Genomic location(hg38): chr9:137716625-137752408:+
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0001056
MONDO name: gastric cancer
Disease details: gastric cancer
Disease DO ID:
10534
Disease MeSH ID:
-
Disease NCIt ID:
C9331
Disease ICD11 ID:
1397617262
Disease OMIM ID:
613659
Species: Human
Species details: Homo sapiens
Tissue specimen:

tumor tissue; plasma

Cell lines:

SNU-1; MKN-45

In vivo animal model:

-

circRNA-disease information
Expression pattern:
UP
Associated gene: 372 mRNAs
Associated microRNA: miR-370, miR-626, miR-637, miR-648, miR-326, miR-574-5p
Biological function: Prognostic biomarker for postoperative recurrence; potentially negatively associated with malignant behavior of GC.
Molecular mechanism: Predicted ceRNA network (CircInteractome/multimiR) for circRNA-miRNA-mRNA interactions; not experimentally verified.
Biological pathway or process:

ceRNA regulation (other); Hippo/YAP (other); cell cycle (other); migration (other)

Detected method:
Q
S
Validation methods:

circRNA-seq; RT-qPCR; Clinical Sample Validation; Survival Analysis; ROC Analysis; Bioinformatics Analysis; divergent primers PCR; Sanger Sequencing; Actinomycin D / DRB Stability Assay; RNase R Treatment

Clinical significance:

High expression is associated with longer RFS and OS; part of circPanel prognostic model.

Description:

hsa_circ_0002647 (from EHMT1) is upregulated in GC patients with good prognosis and its high expression is associated with longer RFS/OS. The study validates it by qRT-PCR and circularity/stability assays and uses it with hsa_circ_0005092 to build a prognostic circPanel; its ceRNA network is computationally predicted but not experimentally confirmed.

Confidence score:

0.7047

Other information
Title:

Development of a two-circular RNA panel as potential prognostic biomarker for gastric cancer.

Journal: Journal of translational medicine
Published: 2021
PubMed ID: 34600555
Study type:

combined biological and clinical study

Data availability: -
Code availability: -