circRNA basic information
circBase ID: hsa_circ_0023326
Name: hsa_circ_PPFIA1
Synonym: circPPFIA1
Host Gene: PPFIA1
Genomic location(hg19): -
Genomic location(hg38): -
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005595
MONDO name: laryngeal squamous cell carcinoma
Disease details: laryngeal squamous cell carcinoma
Disease DO ID:
2876
Disease MeSH ID:
-
Disease NCIt ID:
C4044
Disease ICD11 ID:
-
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

LSCC tissues; adjacent normal tissues

Cell lines:

TU212; TU177; LSC-1; TU686; AMC-HN-8; NHBEC

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: ELK1
Associated microRNA: miR-340-3p
Biological function: promotes proliferation, migration, and invasion of LSCC cells; accelerates tumor growth in vivo
Molecular mechanism: ceRNA mechanism: circPPFIA1 sponges miR-340-3p, relieving miR-340-3p-mediated inhibition of ELK1
Biological pathway or process:

proliferation (promotes); migration (promotes); invasion (promotes); ceRNA regulation (promotes)

Detected method:
Q
S
Validation methods:

Bioinformatics Analysis; RT-qPCR; RNase R Treatment; Actinomycin D / DRB Stability Assay; MTT; Colony Formation Assay; Transwell Assay; Luciferase Reporter Assay; RNA Pull-Down; FISH / smFISH; Transfection; In Vivo Animal Model; IHC (Immunohistochemistry); RNA-seq

Clinical significance:

may serve as a novel prognostic or therapeutic target for LSCC

Description:

circPPFIA1 is up-regulated in LSCC tissues and cell lines and promotes malignant phenotypes (proliferation, migration, invasion) and tumor growth. It functions as a ceRNA by sponging miR-340-3p, thereby relieving repression of ELK1 and driving LSCC progression via the miR-340-3p/ELK1 axis.

Confidence score:

0.8195

Other information
Title:

A novel circular RNA circPPFIA1 promotes laryngeal squamous cell carcinoma progression through sponging miR-340-3p and regulating ELK1 expression.

Journal: Bioengineered
Published: 2021
PubMed ID: 34455918
Study type:

combined biological and clinical study

Data availability: GSE117001
Code availability: -