circRNA basic information
circBase ID: hsa_circ_0102495
Name: hsa_circ_GALNT16
Synonym: circ-GALNT16
Host Gene: GALNT16
Genomic location(hg19): -
Genomic location(hg38): -
Subcellular localization: nucleus
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005575
MONDO name: colorectal cancer
Disease details: colorectal cancer
Disease DO ID:
5672, 9256
Disease MeSH ID:
-
Disease NCIt ID:
C4978
Disease ICD11 ID:
-
Disease OMIM ID:
114500
Species: Human
Species details: Homo sapiens
Tissue specimen:

tumor tissues; adjacent normal tissues

Cell lines:

LoVo; DLD-1; SW-480; Caco-2; RKO; HCT 116; HT-29; NCM460

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
DN
Associated gene: hnRNPK, p53, SENP2, SUMO1, Serpine1, p21
Associated microRNA: -
Biological function: Suppresses colorectal cancer cell proliferation, migration, invasion and metastasis; promotes apoptosis; restrains tumor growth and liver metastasis in vivo.
Molecular mechanism: Binds hnRNPK (KH3 domain) in the nucleus, enhances hnRNPK SUMOylation by blocking SENP2-mediated deSUMOylation, strengthens hnRNPK-p53 interaction and modulates sequence-specific DNA-binding of the hnRNPK-p53 transcriptional complex, thereby downregulating Serpine1 and upregulating p21.
Biological pathway or process:

proliferation (inhibits); migration (inhibits); invasion (inhibits); metastasis (inhibits); apoptosis (promotes); cell cycle (inhibits); other pathway/process (other)

Detected method:
Q
M
Validation methods:

Microarray; RT-qPCR; Back-Splice Junction PCR / divergent primers PCR; RNase R Treatment; Actinomycin D / DRB Stability Assay; Sanger Sequencing; FISH / smFISH; Nuclear-Cytoplasmic Fractionation; RNA Pull-Down; RIP (RNA Immunoprecipitation); Co-IP; ChIP / ChIP-seq; RNA-seq; Transfection; CCK8; Colony Formation Assay; EdU Staining; Cell Cycle Assay; Annexin V/PI Flow Cytometry; Transwell Assay; Wound Healing Assay; In Vivo Animal Model; IHC (Immunohistochemistry); H&E Staining; Survival Analysis; Bioinformatics Analysis; Clinical Sample Validation; Cohort Study

Clinical significance:

Low circ-GALNT16 expression is associated with advanced tumor size/stage and lymph node metastasis, and correlates with shorter overall survival; circ-GALNT16 may serve as a diagnostic and prognostic biomarker for CRC.

Description:

Circ-GALNT16 is downregulated in colorectal cancer and acts as a tumor suppressor. It predominantly localizes to the nucleus, binds hnRNPK (KH3 domain), enhances hnRNPK SUMOylation by blocking SENP2-mediated deSUMOylation, strengthens hnRNPK-p53 transcriptional complex activity, and thereby represses Serpine1 and increases p21, inhibiting proliferation and metastasis and promoting apoptosis. Low circ-GALNT16 is associated with worse clinical features and shorter overall survival.

Confidence score:

0.9026

Other information
Title:

Circ-GALNT16 restrains colorectal cancer progression by enhancing the SUMOylation of hnRNPK.

Journal: Journal of experimental & clinical cancer research : CR
Published: 2021
PubMed ID: 34452628
Study type:

combined biological and clinical study

Data availability: GSE172229; Table S1; Table S2; Table S6
Code availability: -