circRNA basic information
circBase ID: hsa_circ_0007637
Name: hsa_circ_CREBBP
Synonym: -
Host Gene: CREBBP
Genomic location(hg19): chr16:3900297-3901010:-
Genomic location(hg38): chr16:3850296-3851009:-
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0015459
MONDO name: nasopharyngeal carcinoma
Disease details: nasopharyngeal carcinoma
Disease DO ID:
9261
Disease MeSH ID:
D00007727; D000077274
Disease NCIt ID:
C3871
Disease ICD11 ID:
1883313543
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

NPC tissues; adjacent non-tumorous (NT) tissues

Cell lines:

S18; S22; HK1; 5-8F; CNE2; CNE1; HNE1; S26; 6-10B; NP460

In vivo animal model:

-

circRNA-disease information
Expression pattern:
UP
Associated gene: CREBBP
Associated microRNA: -
Biological function: May serve as a biomarker for NPC and may play a role in NPC development; expression distinguishes NPC tissues from paired healthy tissues and NPC cell lines from a normal epithelial cell line.
Molecular mechanism: Predicted circRNA-miRNA-mRNA ceRNA network; hsa_circ_0007637 originates from aberrant mRNA splicing of CREBBP.
Biological pathway or process:

ceRNA regulation (other); other pathway/process (other)

Detected method:
Q
S
Validation methods:

RT-qPCR; RNA-seq; RNase R Treatment; Clinical Sample Validation; Bioinformatics Analysis

Clinical significance:

May be a biomarker for NPC; expression distinguished NPC tissues from paired healthy tissues and NPC cell lines from a normal epithelial cell line.

Description:

hsa_circ_0007637 was identified by RNA-Seq and validated by qRT-PCR as up-regulated in NPC tissues and in HK1 and CNE2 NPC cell lines. The study suggests that hsa_circ_0007637, derived from the CREBBP gene, may serve as a biomarker for NPC and may participate in NPC development through predicted circRNA-miRNA-mRNA ceRNA-related mechanisms.

Confidence score:

0.5135

Other information
Title:

Identification of differentially expressed circular RNAs in human nasopharyngeal carcinoma.

Journal: Cancer biomarkers : section A of Disease markers
Published: 2020
PubMed ID: 32865182
Study type:

combined biological and clinical study

Data availability: Supplementary files available from http://dx.doi.org/10.3233/CBM-201731
Code availability: -