circRNA basic information
circBase ID: hsa_circ_0000567
Name: hsa_circ_SETD3
Synonym: hsa_circRNA_101436
Host Gene: SETD3
Genomic location(hg19): chr14:99924615-99932150:-
Genomic location(hg38): chr14:99458278-99465813:-
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0007256
MONDO name: hepatocellular carcinoma
Disease details: hepatocellular carcinoma
Disease DO ID:
684, 686
Disease MeSH ID:
D006528
Disease NCIt ID:
C3099
Disease ICD11 ID:
1294035808
Disease OMIM ID:
114550
Species: Human
Species details: Homo sapiens
Tissue specimen:

HCC tissues; paired non-tumorous tissues; xenograft tumour tissues

Cell lines:

HepG2; Hep3B; Huh7; HCCLM3; SK-Hep1; PLC; LO2; 293 T

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
DN
Associated gene: MAPK14, Ago2
Associated microRNA: miR-421
Biological function: inhibits HCC cell proliferation and tumor growth; induces G1/S arrest
Molecular mechanism: acts as a miRNA sponge (ceRNA) for miR-421 to regulate MAPK14
Biological pathway or process:

ceRNA regulation (other); proliferation (inhibits); cell cycle (inhibits)

Detected method:
Q
M
Validation methods:

Microarray; RT-qPCR; Back-Splice Junction PCR / divergent primers PCR; RNase R Treatment; Sanger Sequencing; Luciferase Reporter Assay; RIP (RNA Immunoprecipitation); Transfection; CCK8; EdU Staining; Colony Formation Assay; Cell Cycle Assay; In Vivo Animal Model; IHC (Immunohistochemistry); Survival Analysis; Clinical Sample Validation; Bioinformatics Analysis; Western Blot

Clinical significance:

Low expression of circSETD3 in HCC tissues significantly predicted an unfavourable prognosis and was correlated with larger tumour size and poor differentiation of HCC in patients.

Description:

circSETD3 (hsa_circRNA_0000567/hsa_circRNA_101436) is down-regulated in hepatocellular carcinoma and functions as a tumor suppressor by inhibiting proliferation and inducing G1/S arrest. Mechanistically, it acts as a ceRNA sponge for miR-421, thereby relieving miR-421-mediated repression of MAPK14 and suppressing HCC growth in vitro and in a cell line-derived xenograft model. Clinically, low circSETD3 expression is associated with worse RFS/OS and adverse clinicopathologic features.

Confidence score:

0.8711

Other information
Title:

CircSETD3 (Hsa_circ_0000567) acts as a sponge for microRNA-421 inhibiting hepatocellular carcinoma growth.

Journal: Journal of experimental & clinical cancer research : CR
Published: 2019
PubMed ID: 30795787
Study type:

combined biological and clinical study

Data availability: -
Code availability: -