circRNA basic information
circBase ID: hsa_circ_0067717
Name: hsa_circ_RNF13
Synonym: circ-RNF13
Host Gene: RNF13
Genomic location(hg19): chr3:149563797-149613347:+
Genomic location(hg38): chr3:149846010-149895560:+
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0007256
MONDO name: hepatocellular carcinoma
Disease details: HBV-associated hepatocellular carcinoma
Disease DO ID:
684, 686
Disease MeSH ID:
D006528
Disease NCIt ID:
C3099
Disease ICD11 ID:
1294035808
Disease OMIM ID:
114550
Species: Human
Species details: Homo sapiens
Tissue specimen:

tumor tissues; adjacent liver tissues

Cell lines:

Huh7-HBV; Hep3B-HBV; Huh7; Hep3B; THLE-2

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: TGIF2, RNF13
Associated microRNA: miR-424-5p
Biological function: promotes proliferation, colony formation, migration and invasion; inhibits apoptosis; promotes tumor growth in vivo; promotes HBV expression and replication
Molecular mechanism: ceRNA sponging miR-424-5p to regulate TGIF2
Biological pathway or process:

proliferation (promotes); apoptosis (inhibits); migration (promotes); invasion (promotes); ceRNA regulation (promotes); viral replication (promotes)

Detected method:
Q
Validation methods:

RT-qPCR; RNase R Treatment; Nuclear-Cytoplasmic Fractionation; Clinical Sample Validation; Transfection; Luciferase Reporter Assay; MTT; Colony Formation Assay; Annexin V/PI Flow Cytometry; Transwell Assay; ELISA; In Vivo Animal Model; Western Blot; Bioinformatics Analysis

Clinical significance:

-

Description:

circ-RNF13 is up-regulated in HBV-associated HCC tissues and HBV-expressing HCC cells, mainly localized in the cytoplasm. It promotes malignant phenotypes and HBV replication by sponging miR-424-5p and positively regulating TGIF2 in a ceRNA axis.

Confidence score:

0.7421

Other information
Title:

Circ-RNF13, as an oncogene, regulates malignant progression of HBV-associated hepatocellular carcinoma cells and HBV infection through ceRNA pathway of circ-RNF13/miR-424-5p/TGIF2.

Journal: Bosnian journal of basic medical sciences
Published: 2021
PubMed ID: 33714261
Study type:

combined biological and clinical study

Data availability: -
Code availability: -