circRNA basic information
circBase ID: hsa_circ_0007158
Name: hsa_circ_FAM169A
Synonym: -
Host Gene: FAM169A
Genomic location(hg19): chr5:74109664-74137504:-
Genomic location(hg38): chr5:74813839-74841679:-
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0011385
MONDO name: intervertebral disk degenerative disorder
Disease details: intervertebral disc degeneration
Disease DO ID:
90
Disease MeSH ID:
D055959
Disease NCIt ID:
C26983
Disease ICD11 ID:
-
Disease OMIM ID:
603932
Species: Human
Species details: Homo sapiens
Tissue specimen:

degenerative nucleus pulposus (NP) tissues / NP tissues

Cell lines:

-

In vivo animal model:

other disease animal model

circRNA-disease information
Expression pattern:
UP
Associated gene: BTRC, AGO2, NF-kappaB
Associated microRNA: miR-583
Biological function: Promotes IDD progression by enhancing ECM catabolism, suppressing ECM anabolism, and increasing proinflammatory cytokine production in NP cells.
Molecular mechanism: Acts as a ceRNA/miRNA sponge for miR-583 to upregulate BTRC, thereby activating the BTRC/NF-kappaB signaling pathway and driving inflammatory and ECM-degradative changes.
Biological pathway or process:

NF-kappaB (promotes); inflammation (promotes); ceRNA regulation (promotes); other pathway/process (promotes)

Detected method:
Q
H
M
Validation methods:

Microarray; Bioinformatics Analysis; RNase R Treatment; divergent primers PCR; Sanger Sequencing; RT-qPCR; FISH / smFISH; Nuclear-Cytoplasmic Fractionation; RIP (RNA Immunoprecipitation); RNA Pull-Down; Luciferase Reporter Assay; Transfection; Western Blot; In Vivo Animal Model; H&E Staining; IF (Immunofluorescence)

Clinical significance:

circ-FAM169A is upregulated in degenerative NP tissues and is positively correlated with IDD grade.

Description:

circ-FAM169A is upregulated in degenerative NP tissues and correlates positively with IDD grade. It promotes disc degeneration by sponging miR-583 to relieve repression of BTRC, leading to activation of NF-kappaB-associated inflammatory and ECM-catabolic programs.

Confidence score:

0.8118

Other information
Title:

The circular RNA FAM169A functions as a competitive endogenous RNA and regulates intervertebral disc degeneration by targeting miR-583 and BTRC.

Journal: Cell death & disease
Published: 2020
PubMed ID: 32366862
Study type:

combined biological and clinical study

Data availability: GSE67566; GSE63492; GSE56081; Supplementary Information accompanies this paper at (10.1038/s41419-020-2543-8).
Code availability: -