circRNA basic information
circBase ID: hsa_circ_0005982
Name: hsa_circ_PTK2
Synonym: CircPTK2
Host Gene: PTK2
Genomic location(hg19): chr8:141828375-141900868:-
Genomic location(hg38): chr8:140818276-140890769:-
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0004992
MONDO name: cancer
Disease details: Cancer-associated cachexia
Disease DO ID:
0050686, 0050687, 162
Disease MeSH ID:
-
Disease NCIt ID:
C9305
Disease ICD11 ID:
-
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

subcutaneous adipose tissues / subcutaneous white adipose tissue (WAT)

Cell lines:

mouse immortalized subcutaneous white preadipocytes; HEK293T; C26

In vivo animal model:

other disease animal model

circRNA-disease information
Expression pattern:
UP
Associated gene: JAZF1, AGO2
Associated microRNA: miR-182-5p
Biological function: promotes lipolysis and inhibits adipogenesis
Molecular mechanism: ceRNA mechanism: circPTK2 sponges miR-182-5p to relieve repression of JAZF1
Biological pathway or process:

lipid metabolism (other); lipolysis (promotes); adipogenesis (inhibits); ceRNA regulation (promotes)

Detected method:
Q
S
Validation methods:

RNA-seq; RT-qPCR; Back-Splice Junction PCR / divergent primers PCR; RNase R Treatment; Sanger Sequencing; Nuclear-Cytoplasmic Fractionation; FISH / smFISH; RIP (RNA Immunoprecipitation); Luciferase Reporter Assay; Transfection; Oil Red O Staining; Western Blot; IHC (Immunohistochemistry); IF (Immunofluorescence); ELISA; In Vivo Animal Model; ROC Analysis; Bioinformatics Analysis; Clinical Sample Validation

Clinical significance:

circPTK2 could be used as a diagnostic marker for CAC (AUC 0.796; specificity 0.854; sensitivity 0.690).

Description:

circPTK2 is up-regulated in subcutaneous adipose tissue from cancer-associated cachexia patients and promotes lipolysis while inhibiting adipogenesis. It acts as a ceRNA by sponging miR-182-5p, thereby relieving repression of JAZF1, and shows diagnostic value for CAC in adipose tissue.

Confidence score:

0.879

Other information
Title:

Novel noncoding RNA CircPTK2 regulates lipolysis and adipogenesis in cachexia.

Journal: Molecular metabolism
Published: 2021
PubMed ID: 34311131
Study type:

combined biological and clinical study

Data availability: GSE174128
Code availability: -