circRNA basic information
circBase ID: hsa_circ_0005600
Name: hsa_circ_YPEL2
Synonym: circYPEL2
Host Gene: YPEL2
Genomic location(hg19): chr17:57430575-57430887:+
Genomic location(hg38): chr17:59353214-59353526:+
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0002974
MONDO name: cervical cancer
Disease details: cervical cancer
Disease DO ID:
4362
Disease MeSH ID:
-
Disease NCIt ID:
C9311
Disease ICD11 ID:
1256072522
Disease OMIM ID:
603956
Species: Human
Species details: Homo sapiens
Tissue specimen:

CC tissues; normal control tissues

Cell lines:

HeLa; SiHa; 293T

In vivo animal model:

-

circRNA-disease information
Expression pattern:
UP
Associated gene: PYGM, BMF, MBNL3, DENND6A, REEP5, KLF6, ITM2C
Associated microRNA: -
Biological function: promotes proliferation, migration and invasion of cervical cancer cells
Molecular mechanism: May regulate cervical cancer through downstream gene expression changes after circYPEL2 knockdown (RNA-seq identified regulated genes; enrichment in EMT and KRAS signaling and metabolic/hypoxia-related pathways).
Biological pathway or process:

proliferation (promotes); migration (promotes); invasion (promotes); EMT (other); KRAS signaling (other); oxidative phosphorylation (other); HIF-1 signaling (other)

Detected method:
Q
S
Validation methods:

RNA-seq; RT-qPCR; Back-Splice Junction PCR / divergent primers PCR; Sanger Sequencing; RNase R Treatment; Actinomycin D / DRB Stability Assay; Nuclear-Cytoplasmic Fractionation; Transfection; CCK8; Colony Formation Assay; Transwell Assay

Clinical significance:

potential biomarker for clinical research of cervical cancer

Description:

circYPEL2 (hsa_circ_0005600), derived from YPEL2 exon 2, is up-regulated in cervical cancer and mainly localized in the cytoplasm. Functional assays show circYPEL2 promotes cervical cancer cell proliferation, migration, and invasion; knockdown alters downstream gene expression with enrichment in EMT and KRAS signaling-related programs.

Confidence score:

0.685

Other information
Title:

Circular RNA circYPEL2: A Novel Biomarker in Cervical Cancer.

Journal: Genes
Published: 2021
PubMed ID: 35052380
Study type:

combined biological and clinical study

Data availability: GSE173112
Code availability: -