circRNA basic information
circBase ID: hsa_circ_0079480
Name: hsa_circ_ISPD
Synonym: -
Host Gene: ISPD
Genomic location(hg19): chr7:16298014-16317851:-
Genomic location(hg38): chr7:16258389-16278226:-
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005575
MONDO name: colorectal cancer
Disease details: stage II/III colon cancer
Disease DO ID:
5672, 9256
Disease MeSH ID:
-
Disease NCIt ID:
C4978
Disease ICD11 ID:
-
Disease OMIM ID:
114500
Species: Human
Species details: Homo sapiens
Tissue specimen:

frozen tumor tissues; adjacent normal tissues

Cell lines:

SW620; HCT116

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: -
Associated microRNA: -
Biological function: promotes migration and metastasis
Molecular mechanism: Knockdown of hsa_circ_0079480 suppresses metastatic phenotypes without affecting host gene expression; specific downstream mechanism not defined.
Biological pathway or process:

migration (promotes); metastasis (promotes)

Detected method:
Q
S
Validation methods:

RNA-seq; Bioinformatics Analysis; RT-qPCR; Clinical Sample Validation; Cohort Study; Survival Analysis; ROC Analysis; Back-Splice Junction PCR / divergent primers PCR; RNase R Treatment; Sanger Sequencing; Transfection; Transwell Assay; In Vivo Animal Model; H&E Staining

Clinical significance:

Included in a four-circRNA-based cirScore that stratifies recurrence risk and is associated with shorter DFS and OS in high-risk (high cirScore) patients.

Description:

hsa_circ_0079480 is overexpressed in recurrent stage II/III colon cancer and promotes metastatic behaviors. Knockdown suppresses migration in vitro and reduces liver and lung metastasis in nude mouse xenograft models; it is also part of a four-circRNA cirScore associated with worse survival when high.

Confidence score:

0.8197

Other information
Title:

A circRNA signature predicts postoperative recurrence in stage II/III colon cancer.

Journal: EMBO molecular medicine
Published: 2019
PubMed ID: 31475771
Study type:

combined biological and clinical study

Data availability: SRA551560 (PRJNA551560); PRJCA001113
Code availability: https://github.com/likelet/CircRNA_colon_recurrent_prediction; https://github.com/likelet/RNAseqPipe