circRNA basic information
circBase ID: hsa_circ_0008234
Name: hsa_circ_FOXP1
Synonym: circFOXP1
Host Gene: FOXP1
Genomic location(hg19): chr3:71090478-71102924:-
Genomic location(hg38): chr3:71041327-71053773:-
Subcellular localization: nucleus and cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005411
MONDO name: gallbladder cancer
Disease details: gallbladder cancer
Disease DO ID:
3121
Disease MeSH ID:
-
Disease NCIt ID:
C7481
Disease ICD11 ID:
922082116
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

GBC tissues; adjacent normal tissues

Cell lines:

NOZ; GBC-SD; EHGB-1; SGC-996; OCUG-1; H69; HIBEC

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: PTBP1, PKLR
Associated microRNA: miR-370
Biological function: promotes cell proliferation, migration, invasion, tumor growth and Warburg effect; inhibits apoptosis
Molecular mechanism: circFOXP1 interacts with PTBP1 to enhance PTBP1 binding to PKLR mRNA and protect PKLR mRNA from decay; circFOXP1 sponges miR-370 to upregulate PKLR, promoting glycolysis/Warburg effect
Biological pathway or process:

proliferation (promotes); migration (promotes); invasion (promotes); apoptosis (inhibits); glycolysis (promotes); oxidative phosphorylation (inhibits); ceRNA regulation (promotes)

Detected method:
Q
B
S
Validation methods:

RNA-seq; RT-qPCR; Back-Splice Junction PCR / divergent primers PCR; Sanger Sequencing; Northern Blot; RNase R Treatment; FISH / smFISH; Nuclear-Cytoplasmic Fractionation; Clinical Sample Validation; Cohort Study; Survival Analysis; Transfection; CCK8; Transwell Assay; Annexin V/PI Flow Cytometry; Cell Cycle Assay; Western Blot; IHC (Immunohistochemistry); RIP (RNA Immunoprecipitation); RNA Pull-Down; Luciferase Reporter Assay; In Vivo Animal Model

Clinical significance:

circFOXP1 expression was positively associated with lymph node metastasis, advanced TNM stage and poor prognosis; high circFOXP1 was an independent risk factor for overall survival in GBC patients

Description:

circFOXP1 (hsa_circ_0008234) is up-regulated in gallbladder cancer and promotes proliferation, migration/invasion, tumor growth, and aerobic glycolysis while inhibiting apoptosis. It increases PKLR expression by binding PTBP1 to stabilize PKLR mRNA and also functions as a miR-370 sponge to de-repress PKLR, thereby enhancing the Warburg effect and associating with poor overall survival.

Confidence score:

0.8871

Other information
Title:

Circular RNA FOXP1 promotes tumor progression and Warburg effect in gallbladder cancer by regulating PKLR expression.

Journal: Molecular cancer
Published: 2019
PubMed ID: 31623628
Study type:

combined biological and clinical study

Data availability: GSE100363
Code availability: -