circRNA basic information
circBase ID: hsa_circ_0000419
Name: hsa_circ_RAB3IP
Synonym: circRAB3IP
Host Gene: RAB3IP
Genomic location(hg19): chr12:70193988-70195501:+
Genomic location(hg38): chr12:69800208-69801721:+
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0009807
MONDO name: osteosarcoma
Disease details: osteosarcoma
Disease DO ID:
3347
Disease MeSH ID:
D012516
Disease NCIt ID:
C9145
Disease ICD11 ID:
-
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

tumor tissues; adjacent non-tumor tissues

Cell lines:

hFOB1.19; U2OS; 143B; MG63; HOS

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: TWIST1
Associated microRNA: miR-580-3p
Biological function: promotes osteosarcoma cell proliferation, migration, invasion and tumor growth
Molecular mechanism: ceRNA sponging miR-580-3p to upregulate TWIST1
Biological pathway or process:

ceRNA regulation (promotes); proliferation (promotes); migration (promotes); invasion (promotes); tumor growth (promotes)

Detected method:
Q
Validation methods:

RT-qPCR; Clinical Sample Validation; Nuclear-Cytoplasmic Fractionation; FISH / smFISH; Luciferase Reporter Assay; RNA Pull-Down; Transfection; CCK8; Colony Formation Assay; Transwell Assay; Western Blot; In Vivo Animal Model; IHC (Immunohistochemistry)

Clinical significance:

High levels of circRAB3IP was correlated with advanced TNM stage, distant metastasis; positively correlated with tumor size

Description:

circRAB3IP is up-regulated in osteosarcoma tissues and cell lines and functions as an oncogenic circRNA. It promotes proliferation, migration, invasion and in vivo tumor growth by sponging miR-580-3p, thereby relieving repression of TWIST1 (circRAB3IP/miR-580-3p/TWIST1 ceRNA axis).

Confidence score:

0.7695

Other information
Title:

CircRAB3IP upregulates twist family BHLH transcription factor (TWIST1) to promote osteosarcoma progression by sponging miR-580-3p.

Journal: Bioengineered
Published: 2021
PubMed ID: 34224315
Study type:

combined biological and clinical study

Data availability: The data used to support the findings of this study are available from the corresponding author upon request.
Code availability: -