circRNA basic information
circBase ID: hsa_circ_0001445
Name: hsa_circ_SMARCA5
Synonym: circSMARCA5
Host Gene: SMARCA5
Genomic location(hg19): chr4:144464661-144465125:+
Genomic location(hg38): chr4:143543508-143543972:+
Subcellular localization: extracellular vesicle
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0018177
MONDO name: glioblastoma
Disease details: Glioblastoma multiforme
Disease DO ID:
3068
Disease MeSH ID:
D005909
Disease NCIt ID:
C3058
Disease ICD11 ID:
-
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

serum; GBM tissues

Cell lines:

-

In vivo animal model:

-

circRNA-disease information
Expression pattern:
DN
Associated gene: SRSF1, VEGFA mRNA isoform ratio
Associated microRNA: -
Biological function: Diagnostic biomarker for GBM; tumor-suppressive in GBM (reported previously by the authors).
Molecular mechanism: In serum EVs, decreased abundance serves as a diagnostic signal; mechanistically (in prior work), circSMARCA5 physically interacts with SRSF1 via a GAUGAA RNA motif affecting migration and angiogenic potential.
Biological pathway or process:

angiogenesis (inhibits); migration (inhibits)

Detected method:
Q
Validation methods:

RT-qPCR; Clinical Sample Validation; ROC Analysis; Bioinformatics Analysis; ddPCR

Clinical significance:

Less abundant in serum sEVs from GBM patients vs unaffected controls and grade 3 glioma; ROC analysis shows diagnostic ability (AUC 0.823 for GBM vs UC) and improved accuracy in multivariable model.

Description:

Serum small extracellular vesicle-derived circSMARCA5 is decreased in GBM patients compared with unaffected controls (and also lower vs grade 3 glioma), and its ddPCR level provides diagnostic discrimination for GBM by ROC analysis.

Confidence score:

0.5047

Other information
Title:

Serum Extracellular Vesicle-Derived circHIPK3 and circSMARCA5 Are Two Novel Diagnostic Biomarkers for Glioblastoma Multiforme.

Journal: Pharmaceuticals (Basel, Switzerland)
Published: 2021
PubMed ID: 34198978
Study type:

combined biological and clinical study

Data availability: Data is contained within the article and supplementary material.
Code availability: -