circRNA basic information
circBase ID: -
Name: hsa_circ_SEC24A
Synonym: circ-0005105
Host Gene: SEC24A
Genomic location(hg19): -
Genomic location(hg38): -
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005184
MONDO name: pancreatic ductal adenocarcinoma
Disease details: pancreatic ductal adenocarcinoma
Disease DO ID:
3498, 3587
Disease MeSH ID:
D021441
Disease NCIt ID:
C9120
Disease ICD11 ID:
581089833
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

PDAC tissues; adjacent normal tissues; pancreatic cancer tissue microarray (TMA); paraffin embedded pancreatic cancer specimens; fresh frozen pancreatic cancer tissue

Cell lines:

PANC-1; SW1990; BXPC-3; CFPAC-1; MIA PACA-2; HPDE6-C7; HPDEC

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: COL11A1, AGO2
Associated microRNA: miR-20a-3p
Biological function: promotes PDAC cell proliferation, invasion, migration, tumorigenesis and metastasis; activates EMT; inhibits apoptosis
Molecular mechanism: ceRNA mechanism: circ-0005105 sponges miR-20a-3p to upregulate COL11A1, leading to EMT activation
Biological pathway or process:

proliferation (promotes); invasion (promotes); migration (promotes); metastasis (promotes); apoptosis (inhibits); EMT (promotes); ceRNA regulation (promotes)

Detected method:
Q
H
M
Validation methods:

Microarray; RT-qPCR; Back-Splice Junction PCR / divergent primers PCR; RNase R Treatment; Actinomycin D / DRB Stability Assay; FISH / smFISH; Nuclear-Cytoplasmic Fractionation; ISH (In Situ Hybridization); Clinical Sample Validation; Bioinformatics Analysis; Luciferase Reporter Assay; RIP (RNA Immunoprecipitation); Transfection; CCK8; EdU Staining; Colony Formation Assay; TUNEL; Transwell Assay; Wound Healing Assay; Western Blot; IHC (Immunohistochemistry); In Vivo Animal Model; H&E Staining; Survival Analysis; Cohort Study

Clinical significance:

Higher circ-0005105 expression correlated positively with the malignant clinical phenotype and poor prognosis of patients with PDAC; potential prognostic marker and therapeutic target

Description:

circ-0005105 is up-regulated in PDAC tissues and cell lines and promotes proliferation, invasion/migration, tumor growth and metastasis. It functions as a ceRNA by sponging miR-20a-3p to upregulate COL11A1, thereby activating EMT, and high circ-0005105 predicts poor survival in PDAC.

Confidence score:

0.8855

Other information
Title:

Circ-0005105 activates COL11A1 by targeting miR-20a-3p to promote pancreatic ductal adenocarcinoma progression.

Journal: Cell death & disease
Published: 2021
PubMed ID: 34183642
Study type:

combined biological and clinical study

Data availability: GSE79634; GSE62452; GSE62165; GSE28735; GSE16515; GSE15471; GSE102238; GSE73338; GSE71729; TCGA
Code availability: -