circRNA basic information
circBase ID: hsa_circ_0006916
Name: hsa_circ_HOMER1
Synonym: circ_0006916
Host Gene: HOMER1
Genomic location(hg19): chr5:78734832-78752841:-
Genomic location(hg38): chr5:79439009-79457018:-
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0007256
MONDO name: hepatocellular carcinoma
Disease details: hepatocellular carcinoma
Disease DO ID:
684, 686
Disease MeSH ID:
D006528
Disease NCIt ID:
C3099
Disease ICD11 ID:
1294035808
Disease OMIM ID:
114550
Species: Human
Species details: Homo sapiens
Tissue specimen:

HCC tumor tissues; adjacent normal liver tissues; tumor tissues

Cell lines:

Huh7; SNU-387; THLE-2

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: SRSF2
Associated microRNA: miR-599
Biological function: Knockdown of circ_0006916 represses HCC cell viability, colony formation, migration and invasion, induces G0/G1 cell cycle arrest and apoptosis, and decreases xenograft tumor growth.
Molecular mechanism: ceRNA mechanism: circ_0006916 sponges miR-599 to regulate SRSF2 expression.
Biological pathway or process:

proliferation (inhibits); migration (inhibits); invasion (inhibits); cell cycle (inhibits); apoptosis (promotes); ceRNA regulation (other)

Detected method:
Q
Validation methods:

RT-qPCR; RNase R Treatment; Actinomycin D / DRB Stability Assay; Luciferase Reporter Assay; RIP (RNA Immunoprecipitation); Transfection; CCK8; Colony Formation Assay; Wound Healing Assay; Transwell Assay; Cell Cycle Assay; Annexin V/PI Flow Cytometry; In Vivo Animal Model; Western Blot; Clinical Sample Validation; Bioinformatics Analysis

Clinical significance:

-

Description:

circ_0006916 is up-regulated in HCC tissues and cell lines. Its knockdown suppresses malignant phenotypes in vitro and tumor growth in a xenograft model by acting as a ceRNA to sponge miR-599 and thereby reduce SRSF2 expression.

Confidence score:

0.7951

Other information
Title:

Hsa_circ_0006916 Knockdown Represses the Development of Hepatocellular Carcinoma via Modulating miR-599/SRSF2 Axis.

Journal: OncoTargets and therapy
Published: 2020
PubMed ID: 33177838
Study type:

combined biological and clinical study

Data availability: -
Code availability: -