circRNA basic information
circBase ID: hsa_circ_0006156
Name: hsa_circ_FNDC3B
Synonym: -
Host Gene: FNDC3B
Genomic location(hg19): chr3:171965322-171969331:+
Genomic location(hg38): chr3:172247532-172251541:+
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0001056
MONDO name: gastric cancer
Disease details: gastric cancer
Disease DO ID:
10534
Disease MeSH ID:
-
Disease NCIt ID:
C9331
Disease ICD11 ID:
1397617262
Disease OMIM ID:
613659
Species: Human
Species details: Homo sapiens
Tissue specimen:

-

Cell lines:

AGS; SGC-7901; MGC-803; BGC-823; GES-1

In vivo animal model:

-

circRNA-disease information
Expression pattern:
UP
Associated gene: IGF2BP3, CD44 mRNA, E-cadherin
Associated microRNA: -
Biological function: Promotes migration and invasion; promotes EMT by reducing E-cadherin; increases CD44 expression.
Molecular mechanism: Forms a ternary complex with IGF2BP3 and CD44 mRNA to increase CD44; reduces E-cadherin protein; circFNDC3B can translate an approximately 25 kD peptide.
Biological pathway or process:

migration (promotes); invasion (promotes); EMT (promotes); proliferation (inhibits); other pathway/process (other)

Detected method:
Q
Validation methods:

divergent primers PCR; RNase R Treatment; Sanger Sequencing; RT-qPCR; Transfection; Wound Healing Assay; Transwell Assay; RIP (RNA Immunoprecipitation); RNA Pull-Down; Western Blot

Clinical significance:

Ectopic expression of circFNDC3B might serve as a marker of distant metastasis of GC during development and a marker of malignant differentiated cells.

Description:

In gastric cancer cell lines, circFNDC3B promotes migration and invasion and facilitates EMT by reducing E-cadherin protein. Mechanistically, it binds IGF2BP3 and CD44 mRNA to form a ternary complex that elevates CD44 expression, and it also shows protein-coding activity producing an ~25 kD peptide.

Confidence score:

0.74

Other information
Title:

FNDC3B circular RNA promotes the migration and invasion of gastric cancer cells via the regulation of E-cadherin and CD44 expression.

Journal: Journal of cellular physiology
Published: 2019
PubMed ID: 30963578
Study type:

biological research

Data availability: -
Code availability: -