circRNA basic information
circBase ID: hsa_circ_000780
Name: hsa_circ_FAM107B
Synonym: -
Host Gene: FAM107B
Genomic location(hg19): -
Genomic location(hg38): -
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0001056
MONDO name: gastric cancer
Disease details: gastric cancer
Disease DO ID:
10534
Disease MeSH ID:
-
Disease NCIt ID:
C9331
Disease ICD11 ID:
1397617262
Disease OMIM ID:
613659
Species: Human
Species details: Homo sapiens
Tissue specimen:

GC tissue; adjacent noncancerous tissue; gastric fluid

Cell lines:

-

In vivo animal model:

-

circRNA-disease information
Expression pattern:
DN
Associated gene: -
Associated microRNA: hsa_miRNA_522-3p, hsa_miRNA_381-3p, hsa_miRNA_300, hsa_miRNA_15a-3p
Biological function: Potential diagnostic biomarker for gastric cancer (including early GC screening).
Molecular mechanism: Bioinformatics-predicted circRNA-miRNA interactions (putative miRNA sponge/ceRNA-like role), without experimental validation.
Biological pathway or process:

ceRNA regulation (other)

Detected method:
Q
M
Validation methods:

Microarray; RT-qPCR; divergent primers PCR; RNase R Treatment; Clinical Sample Validation; Bioinformatics Analysis

Clinical significance:

Significantly downregulated in GC tissue and gastric fluid and proposed as a biomarker for early GC screening; tissue levels correlate with tumor size, tumor stage, T stage, venous invasion, CEA and CA19-9.

Description:

hsa_circ_000780 (host gene FAM107B) is significantly down-regulated in gastric cancer tissues and is also decreased in gastric fluid, supporting its potential as a noninvasive biomarker for early GC screening. Predicted miRNA partners include hsa_miRNA_522-3p, hsa_miRNA_381-3p, hsa_miRNA_300 and hsa_miRNA_15a-3p, but mechanistic interactions were not experimentally validated.

Confidence score:

0.585

Other information
Title:

The circular RNA hsa_circ_000780 as a potential molecular diagnostic target for gastric cancer.

Journal: BMC medical genomics
Published: 2021
PubMed ID: 34838011
Study type:

combined biological and clinical study

Data availability: GSE184882; https://www.ncbi.nlm.nih.gov/gds/?term=GSE184882/
Code availability: -