circRNA basic information
circBase ID: hsa_circ_0000702
Name: hsa_circ_CHD9
Synonym: -
Host Gene: CHD9
Genomic location(hg19): chr16:53288349-53308214:+
Genomic location(hg38): chr16:53254437-53274302:+
Subcellular localization: nucleus and cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0001056
MONDO name: gastric cancer
Disease details: gastric cancer / GC
Disease DO ID:
10534
Disease MeSH ID:
-
Disease NCIt ID:
C9331
Disease ICD11 ID:
1397617262
Disease OMIM ID:
613659
Species: Human
Species details: Homo sapiens
Tissue specimen:

serum; GC tissues; adjacent tissues

Cell lines:

MKN‐45; SGC‐7901; MGC‐803; AGS; GES‐1

In vivo animal model:

-

circRNA-disease information
Expression pattern:
DN
Associated gene: ZNF549
Associated microRNA: hsa‐miR‐708‐5p, hsa‐miR‐28‐5p
Biological function: Potential tumor suppressor and diagnostic/dynamic monitoring biomarker in gastric cancer.
Molecular mechanism: Likely functions via competing endogenous RNA mechanisms (miRNA sponge) based on cytoplasmic enrichment; downstream miRNAs and mRNAs were bioinformatically predicted but not experimentally validated.
Biological pathway or process:

ceRNA regulation (other)

Detected method:
Q
Validation methods:

Back-Splice Junction PCR / divergent primers PCR; RNase R Treatment; Sanger Sequencing; RT-qPCR; Nuclear-Cytoplasmic Fractionation; Clinical Sample Validation; ROC Analysis; Bioinformatics Analysis

Clinical significance:

Down-regulated in GC serum/tissues/cell lines; serum level associated with tumor differentiation and TNM stage; diagnostic biomarker with AUC 0.745 and improved performance when combined with CEA and CA19-9; postoperative increase suggests utility for dynamic monitoring.

Description:

hsa_circ_0000702 is significantly down-regulated in gastric cancer serum, tissues, and GC cell lines and shows diagnostic utility (AUC 0.745), further improved when combined with CEA and CA19-9. It is enriched slightly in the cytoplasm and is proposed to act via a ceRNA mechanism with predicted miRNAs (hsa-miR-708-5p and hsa-miR-28-5p), supporting its potential as a biomarker for diagnosis and postoperative dynamic monitoring.

Confidence score:

0.6841

Other information
Title:

Serum circular RNA hsa_circ_0000702 as a novel biomarker for diagnosis of gastric cancer.

Journal: Journal of clinical laboratory analysis
Published: 2023
PubMed ID: 36644969
Study type:

combined biological and clinical study

Data availability: -
Code availability: -