circRNA basic information
circBase ID: hsa_circ_0001666
Name: hsa_circ_FAM120B
Synonym: -
Host Gene: FAM120B
Genomic location(hg19): chr6:170626457-170639638:+
Genomic location(hg38): chr6:170317369-170330550:+
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005011
MONDO name: Crohn disease
Disease details: Crohn's disease
Disease DO ID:
8778
Disease MeSH ID:
D003424
Disease NCIt ID:
C2965
Disease ICD11 ID:
1267652425
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

colon tissues / colonic biopsies

Cell lines:

-

In vivo animal model:

-

circRNA-disease information
Expression pattern:
UP
Associated gene: mRNAs (candidate ceRNAs)
Associated microRNA: hsa-miR-30b-5p, hsa-miR-30c-5p, hsa-miR-518a-5p, hsa-miR-326, hsa-miR-199b-5p, hsa-miR-22-3p, hsa-miR-125a-5p, hsa-miR-125b-5p, hsa-miR-661, hsa-miR-23b-5p, hsa-miR-133b, hsa-miR-133a-3p, hsa-miR-330-5p
Biological function: Potential involvement in the progression/pathogenesis of Crohn's disease; potential diagnostic biomarker.
Molecular mechanism: Predicted ceRNA network (circRNA/miRNA/mRNA) via microRNA response elements (MREs); functional prediction by GO/KEGG enrichment of target mRNAs.
Biological pathway or process:

ceRNA regulation (other); IL-17 signaling (other); Toll-like receptor signaling (other); TNF signaling (other); immune regulation (other)

Detected method:
Q
M
Validation methods:

Microarray; RNase R Treatment; RT-qPCR; divergent primers PCR; Clinical Sample Validation; ROC Analysis; Bioinformatics Analysis

Clinical significance:

Favorable diagnostic value for Crohn's disease (AUC = 0.858).

Description:

hsa_circ_0001666 is up-regulated in colon tissues from Crohn's disease patients versus UC and healthy controls, and shows diagnostic potential (AUC 0.858). Bioinformatics predicts it may act in a circRNA/miRNA/mRNA (ceRNA) network and be linked to inflammatory/immune pathways relevant to CD.

Confidence score:

0.6556

Other information
Title:

Expression profiles of circular RNAs in colon biopsies from Crohn's disease patients by microarray analysis.

Journal: Journal of clinical laboratory analysis
Published: 2021
PubMed ID: 33955043
Study type:

combined biological and clinical study

Data availability: The original data of this research are available from the corresponding author on request.
Code availability: -