circRNA basic information
circBase ID: hsa_circ_0000936
Name: hsa_circ_SHKBP1
Synonym: SHKBP1
Host Gene: SHKBP1
Genomic location(hg19): chr19:41089303-41089623:+
Genomic location(hg38): chr19:40583397-40583717:+
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
 0002358
MONDO name: laryngeal carcinoma
Disease details: laryngeal cancer
Disease DO ID:
 2600
Disease MeSH ID:
 -
Disease NCIt ID:
 C4855
Disease ICD11 ID:
 -
Disease OMIM ID:
 -
Species: Human
Species details: Homo sapiens
Tissue specimen:

laryngeal cancer tissues; adjacent noncancerous tissues
Cell lines:

TU212; LCC; HaCaT
In vivo animal model:

-
circRNA-disease information
Expression pattern:
UP
Associated gene: -
Associated microRNA: -
Biological function: -
Molecular mechanism: -
Biological pathway or process:

not specified
Detected method:
Q
S
Validation methods:

RNA-seq; RT-qPCR; Clinical Sample Validation
Clinical significance:

-
Description:

hsa_circ_0000936 (SHKBP1) is significantly up-regulated in laryngeal cancer tissues versus adjacent noncancerous tissues based on RNA-seq, and this differential expression was confirmed by RT-qPCR in patient samples.
Confidence score:

0.3588
Other information
Title:

High-throughput sequencing profile of laryngeal cancers: analysis of co-expression and competing endogenous RNA networks of circular RNAs, long non-coding RNAs, and messenger RNAs.

Journal: Annals of translational medicine
Published: 2021
PubMed ID: 33850880
Study type:

combined biological and clinical study
Data availability: -
Code availability: -