circRNA basic information
circBase ID: -
Name: hsa_circ_RTN4
Synonym: circRTN4
Host Gene: RTN4
Genomic location(hg19): -
Genomic location(hg38): -
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0004975
MONDO name: Alzheimer disease
Disease details: Alzheimer’s disease
Disease DO ID:
10652
Disease MeSH ID:
D000544
Disease NCIt ID:
C2866
Disease ICD11 ID:
1611724421
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

cortex; tumor tissues

Cell lines:

-

In vivo animal model:

-

circRNA-disease information
Expression pattern:
DS
Associated gene: HNRNPA2B1, SOD1, B2M, RPL27, EIF3D, PDCD6IP, MIF, NUP93, CDC42
Associated microRNA: hsa-miR-142-3p, hsa-miR-205-5p, hsa-miR-21-5p, hsa-miR-320a
Biological function: Associated with AD traits (DE/Braak/CDR) and acts as a hub node in the circRNA-miRNA-mRNA network connecting to inflammation/viral-response mRNAs.
Molecular mechanism: circRNA-miRNA-mRNA interaction network based on ENCORI AGO-CLIP-seq interactions; circRTN4 connects with multiple miRNAs and downstream mRNAs in IL-12 response/viral process-enriched clusters.
Biological pathway or process:

inflammation (other); immune regulation (other); ceRNA regulation (other); other pathway/process (other)

Detected method:
S
Validation methods:

RNA-seq; Bioinformatics Analysis

Clinical significance:

-

Description:

circRTN4 is a hub circRNA in the shared AD-cancer circRNA-miRNA-mRNA network. It connects to miRNAs including hsa-miR-142-3p, hsa-miR-205-5p, hsa-miR-21-5p and hsa-miR-320a, linking to mRNAs enriched for IL-12 response and viral-process/inflammation-related functions.

Confidence score:

0.1768

Other information
Title:

Revisiting the Relationship Between Alzheimer's Disease and Cancer With a circRNA Perspective.

Journal: Frontiers in cell and developmental biology
Published: 2021
PubMed ID: 33777952
Study type:

bioinformatics study

Data availability: Supplementary Material: https://www.frontiersin.org/articles/10.3389/fcell.2021.647197/full#supplementary-material
Code availability: -