circRNA basic information
circBase ID: hsa_circ_0008558
Name: -
Synonym: -
Host Gene: -
Genomic location(hg19): chr16:48311248-48337216:+
Genomic location(hg38): chr16:48277337-48303305:+
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
 0007256
MONDO name: hepatocellular carcinoma
Disease details: hepatocellular carcinoma
Disease DO ID:
 684, 686
Disease MeSH ID:
 D006528
Disease NCIt ID:
 C3099
Disease ICD11 ID:
 1294035808
Disease OMIM ID:
 114550
Species: Human
Species details: Homo sapiens
Tissue specimen:

HCC tissues; background normal liver tissues; tumour specimens; para-tumour normal background liver tissues
Cell lines:

-
In vivo animal model:

-
circRNA-disease information
Expression pattern:
DN
Associated gene: -
Associated microRNA: -
Biological function: -
Molecular mechanism: not specified
Biological pathway or process:

not specified
Detected method:
Q
S
Validation methods:

RNA-seq; RT-qPCR; Clinical Sample Validation
Clinical significance:

Potential biomarker for HCC expression difference (prognosis not reported for hsa_circ_0008558).
Description:

hsa_circ_0008558 is significantly down-regulated in HCC tissues compared with matched background normal liver tissues based on qPCR validation; mechanistic targets were not investigated.
Confidence score:

0.3588
Other information
Title:

Genome-wide identification and characterization of circular RNA in resected hepatocellular carcinoma and background liver tissue.

Journal: Scientific reports
Published: 2021
PubMed ID: 33727578
Study type:

combined biological and clinical study
Data availability: Supplementary material available at 10.1038/s41598-021-85237-y.
Code availability: -