circRNA basic information
circBase ID: hsa_circ_0007291
Name: hsa_circ_SCAP
Synonym: -
Host Gene: SCAP
Genomic location(hg19): chr3:47466974-47470160:-
Genomic location(hg38): chr3:47425484-47428670:-
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0006456
MONDO name: thymoma
Disease details: thymoma
Disease DO ID:
3275
Disease MeSH ID:
D013945
Disease NCIt ID:
C3411
Disease ICD11 ID:
33869057
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

thymoma tissue; adjacent normal thymic tissue

Cell lines:

-

In vivo animal model:

-

circRNA-disease information
Expression pattern:
UP
Associated gene: SCAP
Associated microRNA: -
Biological function: Associated with immune imbalance and immune-related pathways in thymoma; hypothesized to affect parental gene instability (SCAP).
Molecular mechanism: Predicted ceRNA mechanism via downstream miRNAs-mRNA; possible host-gene-related effect (hypothesis).
Biological pathway or process:

MAPK (other); inflammation (other); immune regulation (other); apoptosis (other); PI3K/AKT (other); ceRNA regulation (other)

Detected method:
Q
S
Validation methods:

RNA-seq; RNase R Treatment; RT-qPCR; divergent primers PCR; Clinical Sample Validation; Bioinformatics Analysis; Survival Analysis

Clinical significance:

Potential biomarker; parental gene SCAP high expression associated with better overall survival in thymoma (circRNA itself not directly analyzed for survival).

Description:

hsa_circ_0007291 is up-regulated in thymoma and was used to build predicted circRNA-miRNA-mRNA networks linked to immune-related pathways (e.g., MAPK/TNF). The study also analyzed its host gene SCAP in Kaplan-Meier plots, suggesting clinical relevance at the parental-gene level.

Confidence score:

0.6556

Other information
Title:

Identification of differentially expressed circular RNAs associated with thymoma.

Journal: Thoracic cancer
Published: 2021
PubMed ID: 33704915
Study type:

combined biological and clinical study

Data availability: -
Code availability: -