circRNA basic information
circBase ID: hsa_circ_0001946
Name: hsa_circ_CDR1
Synonym: CDR1as
Host Gene: CDR1
Genomic location(hg19): chrX:139865339-139866824:+
Genomic location(hg38): chrX:140783174-140784659:+
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0018666
MONDO name: hepatoblastoma
Disease details: hepatoblastoma
Disease DO ID:
687
Disease MeSH ID:
D018197
Disease NCIt ID:
C3728
Disease ICD11 ID:
1241693063; 1556608523
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

HB tissues; adjacent normal liver tissues

Cell lines:

HepG2; HUH6; LO2; HEK 293T

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: KLF4
Associated microRNA: miR-7-5p
Biological function: promotes proliferation; promotes stemness
Molecular mechanism: Acts as a miR-7-5p sponge, thereby relieving repression of KLF4.
Biological pathway or process:

proliferation (promotes); stemness (promotes); ceRNA regulation (promotes)

Detected method:
Q
Validation methods:

Back-Splice Junction PCR / divergent primers PCR; RNase R Treatment; Sanger Sequencing; RT-qPCR; FISH / smFISH; Nuclear-Cytoplasmic Fractionation; RNA Pull-Down; Luciferase Reporter Assay; Transfection; CCK8; Colony Formation Assay; EdU Staining; Flow Cytometry(Non-apoptosis/cycle); In Vivo Animal Model; IHC (Immunohistochemistry); Western Blot; Clinical Sample Validation; Bioinformatics Analysis

Clinical significance:

-

Description:

CDR1as is up-regulated in hepatoblastoma tissues/cell lines and in CSC-enriched spheres. Functionally, CDR1as promotes HB cell proliferation and cancer stemness by acting as a ceRNA that sponges miR-7-5p, thereby increasing KLF4 expression; CDR1as knockdown suppresses tumor growth in a HepG2 xenograft model.

Confidence score:

0.8634

Other information
Title:

CircRNA CDR1as promotes hepatoblastoma proliferation and stemness by acting as a miR-7-5p sponge to upregulate KLF4 expression.

Journal: Aging
Published: 2020
PubMed ID: 33052880
Study type:

combined biological and clinical study

Data availability: -
Code availability: -