circRNA basic information
circBase ID: -
Name: hsa_circ_RREB1
Synonym: hsa_circRNA_104056
Host Gene: RREB1
Genomic location(hg19): -
Genomic location(hg38): -
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0018881
MONDO name: myelodysplastic syndrome
Disease details: myelodysplastic syndrome
Disease DO ID:
0050908
Disease MeSH ID:
-
Disease NCIt ID:
C3247
Disease ICD11 ID:
-
Disease OMIM ID:
614286
Species: Human
Species details: Homo sapiens
Tissue specimen:

bone marrow / BM; PBMCs; peripheral blood / PB

Cell lines:

-

In vivo animal model:

-

circRNA-disease information
Expression pattern:
UP
Associated gene: -
Associated microRNA: hsa‐miR‐637, hsa‐miR‐623, hsa‐miR‐377‐3p, hsa‐miR‐193b‐5p, hsa‐miR‐616‐3p
Biological function: Potential roles in the incidence and development of MDS (predicted).
Molecular mechanism: Predicted ceRNA mechanism via circRNA-miRNA-mRNA network.
Biological pathway or process:

ceRNA regulation (other); cell cycle (other); p53 signaling (other)

Detected method:
Q
M
Validation methods:

Microarray; RT-qPCR; divergent primers PCR; Sanger Sequencing; Back-Splice Junction PCR / divergent primers PCR; Clinical Sample Validation; ROC Analysis; Survival Analysis; Bioinformatics Analysis

Clinical significance:

Valuable for diagnosis and prognosis of MDS; ROC AUC 0.890; high expression associated with poorer overall survival.

Description:

hsa_circRNA_104056 is up-regulated in MDS bone marrow, shows strong diagnostic performance (highest AUC among the six circRNAs), and its high expression predicts poorer overall survival. It is included in a predicted circRNA-miRNA-mRNA ceRNA network that may relate to MDS pathogenesis.

Confidence score:

0.7151

Other information
Title:

Identification of circular RNAs as novel biomarkers and potentially functional competing endogenous RNA network for myelodysplastic syndrome patients.

Journal: Cancer science
Published: 2021
PubMed ID: 33560542
Study type:

combined biological and clinical study

Data availability: -
Code availability: -