circRNA basic information
circBase ID: hsa_circ_0023990
Name: hsa_circ_NOX4
Synonym: -
Host Gene: NOX4
Genomic location(hg19): chr11:89165951-89185063:-
Genomic location(hg38): chr11:89432783-89451895:-
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0004658
MONDO name: breast carcinoma in situ
Disease details: early-stage breast cancer
Disease DO ID:
8791
Disease MeSH ID:
D000071960
Disease NCIt ID:
C3641
Disease ICD11 ID:
1264360394
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

tumour tissue; adjacent normal breast tissue

Cell lines:

-

In vivo animal model:

-

circRNA-disease information
Expression pattern:
UP
Associated gene: -
Associated microRNA: hsa-miR-548b-3p
Biological function: potential microRNA sponging
Molecular mechanism: Negative co-expression with miRNA suggests sponging; binding sites predicted in circRNA sequence.
Biological pathway or process:

ceRNA regulation (other)

Detected method:
Q
S
Validation methods:

RNA-seq; Back-Splice Junction PCR / divergent primers PCR; Sanger Sequencing; RT-qPCR; Clinical Sample Validation; Bioinformatics Analysis

Clinical significance:

diagnostic implications in breast cancer

Description:

hsa_circ_0023990 is reported as up-regulated in early-stage breast cancer based on RNA-seq analysis and is suggested to interact with hsa-miR-548b-3p from co-expression and binding-site prediction. RT-qPCR was performed but did not show statistically significant up-regulation, so evidence strength is limited.

Confidence score:

0.585

Other information
Title:

Identification of novel dysregulated circular RNAs in early-stage breast cancer.

Journal: Journal of cellular and molecular medicine
Published: 2021
PubMed ID: 33544410
Study type:

combined biological and clinical study

Data availability: SRP156355; PRJNA603126
Code availability: -