circRNA basic information
circBase ID: hsa_circ_0004339
Name: hsa_circ_DONSON
Synonym: -
Host Gene: DONSON
Genomic location(hg19): chr21:34953607-34958487:-
Genomic location(hg38): chr21:33581301-33586181:-
Subcellular localization: nucleus
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0001056
MONDO name: gastric cancer
Disease details: gastric cancer
Disease DO ID:
10534
Disease MeSH ID:
-
Disease NCIt ID:
C9331
Disease ICD11 ID:
1397617262
Disease OMIM ID:
613659
Species: Human
Species details: Homo sapiens
Tissue specimen:

gastric cancer tissues; adjacent normal tissues

Cell lines:

BGC-823; AGS; MGC-803; MKN74; HGC-27; SGC-7901; GES-1

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: SOX4 promoter, NURF complex, SNF2L, BPTF, RBBP4
Associated microRNA: -
Biological function: Promotes gastric cancer cell proliferation, migration and invasion; inhibits apoptosis; promotes tumor growth in vivo.
Molecular mechanism: Nuclear circ-DONSON associates with the NURF chromatin-remodeling complex (via direct interaction with SNF2L) and recruits it to the SOX4 promoter to increase chromatin accessibility/active histone marks and activate SOX4 transcription.
Biological pathway or process:

proliferation (promotes); apoptosis (inhibits); migration (promotes); invasion (promotes); other pathway/process (promotes)

Detected method:
Q
B
H
M
Validation methods:

Microarray; RT-qPCR; Northern Blot; ISH (In Situ Hybridization); FISH / smFISH; Nuclear-Cytoplasmic Fractionation; Clinical Sample Validation; Cohort Study; Survival Analysis; Transfection; CCK8; Colony Formation Assay; EdU Staining; IF (Immunofluorescence); Annexin V/PI Flow Cytometry; Transwell Assay; Western Blot; ChIP / ChIP-seq; Luciferase Reporter Assay; RIP (RNA Immunoprecipitation); RNA Pull-Down; In Vivo Animal Model; IHC (Immunohistochemistry); Bioinformatics Analysis

Clinical significance:

Elevated circ-DONSON is positively associated with advanced TNM stage, lymph node metastasis, and unfavorable prognosis; high expression correlates with lower overall survival and disease-free survival.

Description:

circ-DONSON (hsa_circ_0004339) is upregulated in gastric cancer and its high expression is associated with advanced stage and poor survival. Functionally, it promotes proliferation, migration/invasion and tumor growth while inhibiting apoptosis. Mechanistically, nuclear circ-DONSON binds SNF2L and recruits the NURF complex to the SOX4 promoter to activate SOX4 transcription.

Confidence score:

0.8419

Other information
Title:

Circular RNA circ-DONSON facilitates gastric cancer growth and invasion via NURF complex dependent activation of transcription factor SOX4.

Journal: Molecular cancer
Published: 2019
PubMed ID: 30922402
Study type:

combined biological and clinical study

Data availability: GSE83521
Code availability: -