circRNA basic information
circBase ID: -
Name: hsa_circ_SLC8A1
Synonym: circSLC8A1
Host Gene: SLC8A1
Genomic location(hg19): -
Genomic location(hg38): -
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005021
MONDO name: dilated cardiomyopathy
Disease details: dilated cardiomyopathy
Disease DO ID:
12930
Disease MeSH ID:
D002311
Disease NCIt ID:
C84673
Disease ICD11 ID:
1916294688
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

heart tissues

Cell lines:

hiPSCs; hiPSC-CMs

In vivo animal model:

-

circRNA-disease information
Expression pattern:
UP
Associated gene: QKI
Associated microRNA: -
Biological function: potential biomarker for pathological status indication of heart disease
Molecular mechanism: host gene-associated increase (positive correlation with linear transcript); QKI-dependent circRNA biogenesis
Biological pathway or process:

not specified

Detected method:
Q
Validation methods:

RT-qPCR; Clinical Sample Validation

Clinical significance:

circSLC8A1 expression was significantly increased in heart tissues from patients suffering from dilated cardiomyopathy, compared with healthy controls, suggesting it may indicate pathological status of heart disease.

Description:

circSLC8A1 is significantly up-regulated in dilated cardiomyopathy heart tissue versus healthy controls by qRT-PCR. Its increase correlates with increased SLC8A1 linear transcripts and is sensitive to QKI knockdown in hiPSC-derived cardiomyocytes, supporting a QKI-linked biogenesis/maintenance. The study proposes circSLC8A1 as a potential biomarker indicating pathological status of heart disease.

Confidence score:

0.2995

Other information
Title:

Signature of circular RNAs in human induced pluripotent stem cells and derived cardiomyocytes.

Journal: Stem cell research & therapy
Published: 2018
PubMed ID: 29523209
Study type:

combined biological and clinical study

Data availability: -
Code availability: -