circRNA basic information
circBase ID: hsa_circ_0009910
Name: hsa_circ_MFN2
Synonym: -
Host Gene: MFN2
Genomic location(hg19): chr1:12049221-12052747:+
Genomic location(hg38): chr1:11989164-11992690:+
Subcellular localization: extracellular
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0007256
MONDO name: hepatocellular carcinoma
Disease details: hepatocellular carcinoma
Disease DO ID:
684, 686
Disease MeSH ID:
D006528
Disease NCIt ID:
C3099
Disease ICD11 ID:
1294035808
Disease OMIM ID:
114550
Species: Human
Species details: Homo sapiens
Tissue specimen:

tumor tissue; plasma

Cell lines:

HepG2; Huh7; Hep3B

In vivo animal model:

-

circRNA-disease information
Expression pattern:
UP
Associated gene: DLGAP5, MCM5, MCM6, MCM3, CDC20, CCNB1, CDC7
Associated microRNA: hsa-miR-455-5p, hsa-miR-615-3p
Biological function: unknown
Molecular mechanism: Putative miRNA sponge (ceRNA) in a circRNA-miRNA-mRNA network (hsa-miR-455-5p and hsa-miR-615-3p) affecting hub genes involved in DNA replication and cell cycle.
Biological pathway or process:

cell cycle (promotes); DNA replication (promotes); ceRNA regulation (other)

Detected method:
Q
M
Validation methods:

Microarray; RT-qPCR; RNase R Treatment; Back-Splice Junction PCR / divergent primers PCR; Clinical Sample Validation; Agarose gel electrophoresis; Bioinformatics Analysis

Clinical significance:

Potential biomarker in tissue and plasma for HCC (up-regulated in both).

Description:

hsa_circ_0009910 is up-regulated in HCC tissue and plasma and was experimentally validated as a circular, RNase R-resistant transcript that can be excreted into hepatoma-cell culture medium. It is proposed to act in a circRNA-miRNA-mRNA (ceRNA) network by interacting with hsa-miR-455-5p and hsa-miR-615-3p to modulate cell-cycle/DNA-replication hub genes (e.g., MCM family, CCNB1, CDC20, CDC7, DLGAP5).

Confidence score:

0.6193

Other information
Title:

Three novel circRNAs upregulated in tissue and plasma from hepatocellular carcinoma patients and their regulatory network.

Journal: Cancer cell international
Published: 2021
PubMed ID: 33482819
Study type:

combined biological and clinical study

Data availability: GSE78520; GSE94508; GSE97332; GSE135806; GSE76903; GSE14520; TCGA-LIHC
Code availability: -