circRNA basic information
circBase ID: hsa_circ_0052001
Name: -
Synonym: -
Host Gene: -
Genomic location(hg19): chr19:50720871-50721028:+
Genomic location(hg38): chr19:50217614-50217771:+
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
 0001056
MONDO name: gastric cancer
Disease details: gastric cancer / GC
Disease DO ID:
 10534
Disease MeSH ID:
 -
Disease NCIt ID:
 C9331
Disease ICD11 ID:
 1397617262
Disease OMIM ID:
 613659
Species: Human
Species details: Homo sapiens
Tissue specimen:

GC tissue; adjacent normal mucosa; serum
Cell lines:

AGS
In vivo animal model:

-
circRNA-disease information
Expression pattern:
DS
Associated gene: -
Associated microRNA: -
Biological function: Component of the 8-circRNA diagnostic panel for GC.
Molecular mechanism: Not specified
Biological pathway or process:

not specified
Detected method:
Q
M
Validation methods:

Microarray; RT-qPCR; RNase R Treatment; divergent primers PCR; Clinical Sample Validation; ROC Analysis; Bioinformatics Analysis
Clinical significance:

Included in the 8-circRNA serum model for discriminating GC from controls and for early-stage detection.
Description:

hsa_circ_0052001 is one of the 8 circRNAs comprising a serum-based diagnostic panel for gastric cancer identified from microarray discovery and validated by RT-qPCR. Unlike most other panel members, it was noted as an exception regarding EIF4A3 interaction in the discussion.
Confidence score:

0.6556
Other information
Title:

Diagnostic efficacy of circular RNAs as noninvasive, liquid biopsy biomarkers for early detection of gastric cancer.

Journal: Molecular cancer
Published: 2022
PubMed ID: 35139874
Study type:

combined biological and clinical study
Data availability: GSE89143; GSE83521
Code availability: -