circRNA basic information
circBase ID: hsa_circ_0030998
Name: hsa_circ_LAMP1
Synonym: -
Host Gene: LAMP1
Genomic location(hg19): chr13:113963957-113964177:+
Genomic location(hg38): chr13:113309642-113309862:+
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0019087
MONDO name: cholangiocarcinoma
Disease details: cholangiocarcinoma
Disease DO ID:
4947
Disease MeSH ID:
D018281
Disease NCIt ID:
C4436
Disease ICD11 ID:
2110597275
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

CCA tissues; adjacent normal samples

Cell lines:

KMBC; RBE; HCCC‐9810; Huh‐28; QBC939; HuCCT1; CCLP1; HIBEC

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: YY1, Ago2
Associated microRNA: miR‐556‐5p, miR‐567
Biological function: promotes cell growth/proliferation, migration, invasion and metastasis; inhibits apoptosis
Molecular mechanism: ceRNA mechanism: circ-LAMP1 sponges miR-556-5p and miR-567 to relieve repression of YY1 at the post-transcriptional level
Biological pathway or process:

proliferation (promotes); apoptosis (inhibits); migration (promotes); invasion (promotes); metastasis (promotes); ceRNA regulation (promotes)

Detected method:
Q
M
Validation methods:

Microarray; RT-qPCR; Nuclear-Cytoplasmic Fractionation; RNase R Treatment; Actinomycin D / DRB Stability Assay; RIP (RNA Immunoprecipitation); RNA Pull-Down; Luciferase Reporter Assay; Transfection; CCK8; Colony Formation Assay; Annexin V/PI Flow Cytometry; Transwell Assay; Wound Healing Assay; Western Blot; IHC (Immunohistochemistry); In Vivo Animal Model; H&E Staining; Clinical Sample Validation; Cohort Study; Survival Analysis

Clinical significance:

High circ-LAMP1 expression is associated with clinical severity, high post-operative recurrence and poor prognosis, and is an independent prognostic indicator for OS/DFS in CCA.

Description:

circ-LAMP1 is up-regulated in cholangiocarcinoma and predominantly localized in the cytoplasm. It promotes CCA proliferation, invasion and metastasis and inhibits apoptosis by acting as a ceRNA that sponges miR-556-5p and miR-567, thereby up-regulating YY1. High circ-LAMP1 expression is associated with recurrence and poor survival in CCA patients.

Confidence score:

0.8737

Other information
Title:

Circ-LAMP1 contributes to the growth and metastasis of cholangiocarcinoma via miR-556-5p and miR-567 mediated YY1 activation.

Journal: Journal of cellular and molecular medicine
Published: 2021
PubMed ID: 33675150
Study type:

combined biological and clinical study

Data availability: All data obtained during this research are available within the paper or available from the authors as needed.
Code availability: -