circRNA basic information
circBase ID: hsa_circ_0079929
Name: hsa_circ_CDK13
Synonym: circCDK13
Host Gene: CDK13
Genomic location(hg19): chr7:40027197-40027857:+
Genomic location(hg38): chr7:39987598-39988258:+
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0008315
MONDO name: prostate cancer
Disease details: prostate cancer
Disease DO ID:
10283
Disease MeSH ID:
D011471
Disease NCIt ID:
C7378
Disease ICD11 ID:
-
Disease OMIM ID:
-
Species: Human
Species details: Homo sapiens
Tissue specimen:

PCa tissues; benign prostatic hyperplasia (BPH) tissues

Cell lines:

PC3; 22RV1

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
UP
Associated gene: E2F5, CDK13
Associated microRNA: miR-212-5p, miR-449a
Biological function: promotes proliferation
Molecular mechanism: circCDK13 acts as a ceRNA/miRNA sponge for miR-212-5p and miR-449a, relieving repression of E2F5; E2F5 transcriptionally activates CDK13 to form a positive feedback loop.
Biological pathway or process:

proliferation (promotes); apoptosis (inhibits); ceRNA regulation (promotes)

Detected method:
Q
B
M
Validation methods:

Microarray; RT-qPCR; Back-Splice Junction PCR / divergent primers PCR; Sanger Sequencing; RNase R Treatment; Northern Blot; Luciferase Reporter Assay; RNA Pull-Down; Transfection; Colony Formation Assay; MTT; Annexin V/PI Flow Cytometry; In Vivo Animal Model; TUNEL; Western Blot; ISH (In Situ Hybridization); ChIP / ChIP-seq

Clinical significance:

circCDK13 is significantly upregulated in PCa tissues compared with BPH tissues and correlates positively with E2F5 mRNA level.

Description:

circCDK13 is upregulated in prostate cancer and mainly localizes in the cytoplasm. It promotes PCa cell proliferation (and its depletion increases apoptosis) by sponging miR-212-5p and miR-449a to relieve repression of E2F5, forming a CDK13/circCDK13/miR-212-5p/miR-449a/E2F5 positive feedback loop that enhances tumor growth in xenografts.

Confidence score:

0.799

Other information
Title:

CDK13 upregulation-induced formation of the positive feedback loop among circCDK13, miR-212-5p/miR-449a and E2F5 contributes to prostate carcinogenesis.

Journal: Journal of experimental & clinical cancer research : CR
Published: 2021
PubMed ID: 33390186
Study type:

combined biological and clinical study

Data availability: -
Code availability: -