circRNA basic information
circBase ID: hsa_circ_0004831
Name: hsa_circ_RSF1
Synonym: -
Host Gene: RSF1
Genomic location(hg19): chr11:77402203-77404656:-
Genomic location(hg38): chr11:77691158-77693611:-
Subcellular localization: not tested
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0005575
MONDO name: colorectal cancer
Disease details: colorectal cancer
Disease DO ID:
5672, 9256
Disease MeSH ID:
-
Disease NCIt ID:
C4978
Disease ICD11 ID:
-
Disease OMIM ID:
114500
Species: Human
Species details: Homo sapiens
Tissue specimen:

serum

Cell lines:

-

In vivo animal model:

-

circRNA-disease information
Expression pattern:
UP
Associated gene: ZBED1
Associated microRNA: hsa-miR-4326
Biological function: May act as an oncogene in CRC; associated with distant metastasis and differentiation grade; potential prognostic biomarker.
Molecular mechanism: Constructed a ceRNA network in which hsa_circ_0004831 potentially regulates hsa-miR-4326 and downstream target mRNAs; co-expressed mRNAs linked to EMT, WNT and p53 signaling pathways (via GSEA).
Biological pathway or process:

EMT (other); Wnt/beta-catenin (other); p53 signaling (other); ceRNA regulation (other)

Detected method:
Q
S
Validation methods:

RNA-seq; RT-qPCR; Clinical Sample Validation; Cohort Study; Survival Analysis; Bioinformatics Analysis

Clinical significance:

High expression of hsa_circ_0004831 was linked with poorer prognosis; may be a blood-based prognostic biomarker for CRC.

Description:

hsa_circ_0004831 is up-regulated in CRC serum/blood extracellular vesicles and its high expression is associated with poorer overall survival, suggesting it as a blood-based prognostic biomarker. The study proposes a ceRNA network in which hsa_circ_0004831 may regulate hsa-miR-4326 and downstream mRNAs, with co-expressed genes enriched in EMT, WNT and p53-related pathways.

Confidence score:

0.5534

Other information
Title:

Hsa_circ_0004831 serves as a blood-based prognostic biomarker for colorectal cancer and its potentially circRNA-miRNA-mRNA regulatory network construction.

Journal: Cancer cell international
Published: 2020
PubMed ID: 33292256
Study type:

combined biological and clinical study

Data availability: -
Code availability: -