circRNA basic information
circBase ID: hsa_circ_0032683
Name: hsa_circ_NEK9
Synonym: -
Host Gene: NEK9
Genomic location(hg19): chr14:75590748-75590926:-
Genomic location(hg38): chr14:75124045-75124223:-
Subcellular localization: cytoplasm
 
 
 
 
 
 
 
Disease basic information
MONDO ID:
0007256
MONDO name: hepatocellular carcinoma
Disease details: hepatocellular carcinoma
Disease DO ID:
684, 686
Disease MeSH ID:
D006528
Disease NCIt ID:
C3099
Disease ICD11 ID:
1294035808
Disease OMIM ID:
114550
Species: Human
Species details: Homo sapiens
Tissue specimen:

HCC tumor tissues; paracancerous tissues; normal liver tissues

Cell lines:

HCCLM3; MHCC97-L; Hep3B; SMMC-7721; Huh7; Bel-7402; MHCC97-H; WRL68

In vivo animal model:

cell line-derived xenograft

circRNA-disease information
Expression pattern:
DN
Associated gene: RTN4
Associated microRNA: miR-338-5p
Biological function: inhibits HCC cell proliferation and promotes apoptosis (in vitro and in vivo)
Molecular mechanism: ceRNA mechanism: hsa_circ_0032683 sponges miR-338-5p to up-regulate RTN4
Biological pathway or process:

proliferation (inhibits); apoptosis (promotes); ceRNA regulation (other)

Detected method:
Q
M
Validation methods:

Microarray; Bioinformatics Analysis; RT-qPCR; RNase R Treatment; FISH / smFISH; Luciferase Reporter Assay; Transfection; CCK8; Colony Formation Assay; EdU Staining; Annexin V/PI Flow Cytometry; In Vivo Animal Model; IHC (Immunohistochemistry); TUNEL; Western Blot; Clinical Sample Validation; Survival Analysis

Clinical significance:

Low hsa_circ_0032683 expression was associated with tumor size and tumor number; patients with low expression had worse survival (high expression associated with better prognosis).

Description:

In hepatocellular carcinoma, hsa_circ_0032683 is down-regulated in tumors and HCC cell lines. It suppresses proliferation and promotes apoptosis by acting as a cytoplasmic ceRNA that sponges miR-338-5p, thereby increasing RTN4 expression; higher circRNA levels are associated with better patient survival.

Confidence score:

0.8156

Other information
Title:

Circular RNA hsa_circ_0032683 inhibits the progression of hepatocellular carcinoma by sponging microRNA-338-5p.

Journal: Bioengineered
Published: 2022
PubMed ID: 35030979
Study type:

combined biological and clinical study

Data availability: GSE94508; GSE97332; https://portal.gdc.cancer.gov
Code availability: -